Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C11orf58 (chromosome 11 open reading frame 58)

Identity

Alias_symbol (synonym)SMAP
Other aliasIMAGE145052
HGNC (Hugo) C11orf58
LocusID (NCBI) 10944
Atlas_Id 60890
Location 11p15.2  [Link to chromosome band 11p15]
Location_base_pair Starts at 16738601 and ends at 16758354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C11orf58 (11p15.1) / AGBL4 (1p33)C11orf58 (11p15.1) / PXN (12q24.23)C11orf58 (11p15.1) / SDHAF2 (11q12.2)
LIMCH1 (4p13) / C11orf58 (11p15.1)MASP1 (3q27.3) / C11orf58 (11p15.1)SNIP1 (1p34.3) / C11orf58 (11p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf58   16990
Cards
Entrez_Gene (NCBI)C11orf58  10944  chromosome 11 open reading frame 58
AliasesIMAGE145052; SMAP
GeneCards (Weizmann)C11orf58
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:16738601-16758354 [Contig_View]  C11orf58 [Vega]
TCGA cBioPortalC11orf58
AceView (NCBI)C11orf58
Genatlas (Paris)C11orf58
WikiGenes10944
SOURCE (Princeton)C11orf58
Genetics Home Reference (NIH)C11orf58
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf58  -     chr11:16738601-16758354 +  11p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf58  -     11p15.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf58 - 11p15.2 [CytoView hg19]  C11orf58 - 11p15.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf58 [Mapview hg19]  C11orf58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057169 AK093998 AK094549 AK124165 AK315382
RefSeq transcript (Entrez)NM_001142705 NM_014267
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf58
Cluster EST : UnigeneHs.645792 [ NCBI ]
CGAP (NCI)Hs.645792
Gene ExpressionC11orf58 [ NCBI-GEO ]   C11orf58 [ EBI - ARRAY_EXPRESS ]   C11orf58 [ SEEK ]   C11orf58 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10944
GTEX Portal (Tissue expression)C11orf58
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00193   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00193  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00193
Splice isoforms : SwissVarO00193
PhosPhoSitePlusO00193
Domains : Interpro (EBI)SMAP    SMAP_dom   
Domain families : Pfam (Sanger)SMAP (PF15477)   
Domain families : Pfam (NCBI)pfam15477   
Conserved Domain (NCBI)C11orf58
DMDM Disease mutations10944
Blocks (Seattle)C11orf58
SuperfamilyO00193
Peptide AtlasO00193
HPRD18069
IPIIPI00003419   IPI00917641   IPI00977975   IPI00982700   IPI00981414   
Protein Interaction databases
DIP (DOE-UCLA)O00193
IntAct (EBI)O00193
BioGRIDC11orf58
STRING (EMBL)C11orf58
ZODIACC11orf58
Ontologies - Pathways
QuickGOO00193
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkC11orf58
Atlas of Cancer Signalling NetworkC11orf58
Wikipedia pathwaysC11orf58
Orthology - Evolution
OrthoDB10944
Phylogenetic Trees/Animal Genes : TreeFamC11orf58
HOVERGENO00193
HOGENOMO00193
Homologs : HomoloGeneC11orf58
Homology/Alignments : Family Browser (UCSC)C11orf58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf58
dbVarC11orf58
ClinVarC11orf58
1000_GenomesC11orf58 
Exome Variant ServerC11orf58
ExAC (Exome Aggregation Consortium)C11orf58 (select the gene name)
Genetic variants : HAPMAP10944
Genomic Variants (DGV)C11orf58 [DGVbeta]
DECIPHERC11orf58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf58 
Mutations
ICGC Data PortalC11orf58 
TCGA Data PortalC11orf58 
Broad Tumor PortalC11orf58
OASIS PortalC11orf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf58
DgiDB (Drug Gene Interaction Database)C11orf58
DoCM (Curated mutations)C11orf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf58 (select a term)
intoGenC11orf58
Cancer3DC11orf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf58
Genetic Testing Registry C11orf58
NextProtO00193 [Medical]
TSGene10944
GENETestsC11orf58
Target ValidationC11orf58
Huge Navigator C11orf58 [HugePedia]
snp3D : Map Gene to Disease10944
BioCentury BCIQC11orf58
ClinGenC11orf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10944
Chemical/Pharm GKB GenePA143485353
Clinical trialC11orf58
Miscellaneous
canSAR (ICR)C11orf58 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf58
EVEXC11orf58
GoPubMedC11orf58
iHOPC11orf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.