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C11orf63 (chromosome 11 open reading frame 63)

Identity

Alias_symbol (synonym)FLJ23554
Other alias-
HGNC (Hugo) C11orf63
LocusID (NCBI) 79864
Atlas_Id 60891
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 122882528 and ends at 122959722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CWF19L2 (11q22.3) / C11orf63 (11q24.1)TSPAN31 (12q14.1) / C11orf63 (11q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf63   26288
Cards
Entrez_Gene (NCBI)C11orf63  79864  chromosome 11 open reading frame 63
Aliases
GeneCards (Weizmann)C11orf63
Ensembl hg19 (Hinxton)ENSG00000109944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109944 [Gene_View]  chr11:122882528-122959722 [Contig_View]  C11orf63 [Vega]
ICGC DataPortalENSG00000109944
TCGA cBioPortalC11orf63
AceView (NCBI)C11orf63
Genatlas (Paris)C11orf63
WikiGenes79864
SOURCE (Princeton)C11orf63
Genetics Home Reference (NIH)C11orf63
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf63  -     chr11:122882528-122959722 +  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf63  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblC11orf63 - 11q24.1 [CytoView hg19]  C11orf63 - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf63 [Mapview hg19]  C11orf63 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027207 AK097534 AK291625 BC009820 BC068507
RefSeq transcript (Entrez)NM_024806 NM_199124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf63
Cluster EST : UnigeneHs.164705 [ NCBI ]
CGAP (NCI)Hs.164705
Alternative Splicing GalleryENSG00000109944
Gene ExpressionC11orf63 [ NCBI-GEO ]   C11orf63 [ EBI - ARRAY_EXPRESS ]   C11orf63 [ SEEK ]   C11orf63 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf63 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79864
GTEX Portal (Tissue expression)C11orf63
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUN7
Splice isoforms : SwissVarQ6NUN7
PhosPhoSitePlusQ6NUN7
Domains : Interpro (EBI)DUF4591   
Domain families : Pfam (Sanger)DUF4591 (PF15261)   
Domain families : Pfam (NCBI)pfam15261   
Conserved Domain (NCBI)C11orf63
DMDM Disease mutations79864
Blocks (Seattle)C11orf63
SuperfamilyQ6NUN7
Human Protein AtlasENSG00000109944
Peptide AtlasQ6NUN7
HPRD08035
IPIIPI00015695   IPI00395798   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUN7
IntAct (EBI)Q6NUN7
FunCoupENSG00000109944
BioGRIDC11orf63
STRING (EMBL)C11orf63
ZODIACC11orf63
Ontologies - Pathways
QuickGOQ6NUN7
Ontology : AmiGObrain development  ciliary basal body organization  cerebrospinal fluid secretion  axoneme assembly  
Ontology : EGO-EBIbrain development  ciliary basal body organization  cerebrospinal fluid secretion  axoneme assembly  
NDEx NetworkC11orf63
Atlas of Cancer Signalling NetworkC11orf63
Wikipedia pathwaysC11orf63
Orthology - Evolution
OrthoDB79864
GeneTree (enSembl)ENSG00000109944
Phylogenetic Trees/Animal Genes : TreeFamC11orf63
HOVERGENQ6NUN7
HOGENOMQ6NUN7
Homologs : HomoloGeneC11orf63
Homology/Alignments : Family Browser (UCSC)C11orf63
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf63 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf63
dbVarC11orf63
ClinVarC11orf63
1000_GenomesC11orf63 
Exome Variant ServerC11orf63
ExAC (Exome Aggregation Consortium)C11orf63 (select the gene name)
Genetic variants : HAPMAP79864
Genomic Variants (DGV)C11orf63 [DGVbeta]
DECIPHERC11orf63 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf63 
Mutations
ICGC Data PortalC11orf63 
TCGA Data PortalC11orf63 
Broad Tumor PortalC11orf63
OASIS PortalC11orf63 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf63  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf63
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf63
DgiDB (Drug Gene Interaction Database)C11orf63
DoCM (Curated mutations)C11orf63 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf63 (select a term)
intoGenC11orf63
Cancer3DC11orf63(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf63
Genetic Testing Registry C11orf63
NextProtQ6NUN7 [Medical]
TSGene79864
GENETestsC11orf63
Target ValidationC11orf63
Huge Navigator C11orf63 [HugePedia]
snp3D : Map Gene to Disease79864
BioCentury BCIQC11orf63
ClinGenC11orf63
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79864
Chemical/Pharm GKB GenePA143485358
Clinical trialC11orf63
Miscellaneous
canSAR (ICR)C11orf63 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf63
EVEXC11orf63
GoPubMedC11orf63
iHOPC11orf63
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:10:26 CEST 2017

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