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C11orf65 (chromosome 11 open reading frame 65)

Identity

Alias_symbol (synonym)MGC33948
Other alias-
HGNC (Hugo) C11orf65
LocusID (NCBI) 160140
Atlas_Id 60892
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 108308519 and ends at 108467531 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PIBF1 (13q22.1) / C11orf65 (11q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf65   28519
Cards
Entrez_Gene (NCBI)C11orf65  160140  chromosome 11 open reading frame 65
Aliases
GeneCards (Weizmann)C11orf65
Ensembl hg19 (Hinxton)ENSG00000166323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166323 [Gene_View]  chr11:108308519-108467531 [Contig_View]  C11orf65 [Vega]
ICGC DataPortalENSG00000166323
TCGA cBioPortalC11orf65
AceView (NCBI)C11orf65
Genatlas (Paris)C11orf65
WikiGenes160140
SOURCE (Princeton)C11orf65
Genetics Home Reference (NIH)C11orf65
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf65  -     chr11:108308519-108467531 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf65  -     11q22.3       (hg19-Feb_2009)
EnsemblC11orf65 - 11q22.3 [CytoView hg19]  C11orf65 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBIC11orf65 [Mapview hg19]  C11orf65 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303096 BC029536 BC059411 DB104722 HQ447830
RefSeq transcript (Entrez)NM_001330368 NM_001351110 NM_152587
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf65
Cluster EST : UnigeneHs.653180 [ NCBI ]
CGAP (NCI)Hs.653180
Alternative Splicing GalleryENSG00000166323
Gene ExpressionC11orf65 [ NCBI-GEO ]   C11orf65 [ EBI - ARRAY_EXPRESS ]   C11orf65 [ SEEK ]   C11orf65 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf65 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160140
GTEX Portal (Tissue expression)C11orf65
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCR3
Splice isoforms : SwissVarQ8NCR3
PhosPhoSitePlusQ8NCR3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf65
DMDM Disease mutations160140
Blocks (Seattle)C11orf65
SuperfamilyQ8NCR3
Human Protein AtlasENSG00000166323
Peptide AtlasQ8NCR3
HPRD14579
IPIIPI00168428   IPI00908853   IPI00980688   IPI00979348   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCR3
IntAct (EBI)Q8NCR3
FunCoupENSG00000166323
BioGRIDC11orf65
STRING (EMBL)C11orf65
ZODIACC11orf65
Ontologies - Pathways
QuickGOQ8NCR3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC11orf65
Atlas of Cancer Signalling NetworkC11orf65
Wikipedia pathwaysC11orf65
Orthology - Evolution
OrthoDB160140
GeneTree (enSembl)ENSG00000166323
Phylogenetic Trees/Animal Genes : TreeFamC11orf65
HOVERGENQ8NCR3
HOGENOMQ8NCR3
Homologs : HomoloGeneC11orf65
Homology/Alignments : Family Browser (UCSC)C11orf65
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf65 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf65
dbVarC11orf65
ClinVarC11orf65
1000_GenomesC11orf65 
Exome Variant ServerC11orf65
ExAC (Exome Aggregation Consortium)C11orf65 (select the gene name)
Genetic variants : HAPMAP160140
Genomic Variants (DGV)C11orf65 [DGVbeta]
DECIPHERC11orf65 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf65 
Mutations
ICGC Data PortalC11orf65 
TCGA Data PortalC11orf65 
Broad Tumor PortalC11orf65
OASIS PortalC11orf65 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf65  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf65
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf65
DgiDB (Drug Gene Interaction Database)C11orf65
DoCM (Curated mutations)C11orf65 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf65 (select a term)
intoGenC11orf65
Cancer3DC11orf65(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf65
Genetic Testing Registry C11orf65
NextProtQ8NCR3 [Medical]
TSGene160140
GENETestsC11orf65
Target ValidationC11orf65
Huge Navigator C11orf65 [HugePedia]
snp3D : Map Gene to Disease160140
BioCentury BCIQC11orf65
ClinGenC11orf65
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160140
Chemical/Pharm GKB GenePA144596484
Clinical trialC11orf65
Miscellaneous
canSAR (ICR)C11orf65 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf65
EVEXC11orf65
GoPubMedC11orf65
iHOPC11orf65
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:39 CEST 2017

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