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C11orf68 (chromosome 11 open reading frame 68)

Identity

Alias_symbol (synonym)P5326
BLES03
Other alias
HGNC (Hugo) C11orf68
LocusID (NCBI) 83638
Atlas_Id 42924
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65916812 and ends at 65919060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C11orf68 (11q13.1) / EDC4 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf68   28801
Cards
Entrez_Gene (NCBI)C11orf68  83638  chromosome 11 open reading frame 68
AliasesBLES03; P5326
GeneCards (Weizmann)C11orf68
Ensembl hg19 (Hinxton)ENSG00000175573 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175573 [Gene_View]  chr11:65916812-65919060 [Contig_View]  C11orf68 [Vega]
ICGC DataPortalENSG00000175573
TCGA cBioPortalC11orf68
AceView (NCBI)C11orf68
Genatlas (Paris)C11orf68
WikiGenes83638
SOURCE (Princeton)C11orf68
Genetics Home Reference (NIH)C11orf68
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf68  -     chr11:65916812-65919060 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf68  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblC11orf68 - 11q13.1 [CytoView hg19]  C11orf68 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf68 [Mapview hg19]  C11orf68 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF073483 BC004414 BC010512 BC013185 BM705907
RefSeq transcript (Entrez)NM_001135635 NM_031450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf68
Cluster EST : UnigeneHs.433573 [ NCBI ]
CGAP (NCI)Hs.433573
Alternative Splicing GalleryENSG00000175573
Gene ExpressionC11orf68 [ NCBI-GEO ]   C11orf68 [ EBI - ARRAY_EXPRESS ]   C11orf68 [ SEEK ]   C11orf68 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf68 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83638
GTEX Portal (Tissue expression)C11orf68
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3H3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3H3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3H3
Splice isoforms : SwissVarQ9H3H3
PhosPhoSitePlusQ9H3H3
Domains : Interpro (EBI)DUF1917    TIF_eIF4e-like   
Domain families : Pfam (Sanger)DUF1917 (PF08939)   
Domain families : Pfam (NCBI)pfam08939   
Conserved Domain (NCBI)C11orf68
DMDM Disease mutations83638
Blocks (Seattle)C11orf68
PDB (SRS)1ZTP    2Q4K   
PDB (PDBSum)1ZTP    2Q4K   
PDB (IMB)1ZTP    2Q4K   
PDB (RSDB)1ZTP    2Q4K   
Structural Biology KnowledgeBase1ZTP    2Q4K   
SCOP (Structural Classification of Proteins)1ZTP    2Q4K   
CATH (Classification of proteins structures)1ZTP    2Q4K   
SuperfamilyQ9H3H3
Human Protein AtlasENSG00000175573
Peptide AtlasQ9H3H3
HPRD12553
IPIIPI00940858   IPI00027794   IPI01008795   IPI00914048   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3H3
IntAct (EBI)Q9H3H3
FunCoupENSG00000175573
BioGRIDC11orf68
STRING (EMBL)C11orf68
ZODIACC11orf68
Ontologies - Pathways
QuickGOQ9H3H3
Ontology : AmiGORNA binding  protein binding  
Ontology : EGO-EBIRNA binding  protein binding  
NDEx NetworkC11orf68
Atlas of Cancer Signalling NetworkC11orf68
Wikipedia pathwaysC11orf68
Orthology - Evolution
OrthoDB83638
GeneTree (enSembl)ENSG00000175573
Phylogenetic Trees/Animal Genes : TreeFamC11orf68
HOVERGENQ9H3H3
HOGENOMQ9H3H3
Homologs : HomoloGeneC11orf68
Homology/Alignments : Family Browser (UCSC)C11orf68
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf68 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf68
dbVarC11orf68
ClinVarC11orf68
1000_GenomesC11orf68 
Exome Variant ServerC11orf68
ExAC (Exome Aggregation Consortium)C11orf68 (select the gene name)
Genetic variants : HAPMAP83638
Genomic Variants (DGV)C11orf68 [DGVbeta]
DECIPHERC11orf68 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf68 
Mutations
ICGC Data PortalC11orf68 
TCGA Data PortalC11orf68 
Broad Tumor PortalC11orf68
OASIS PortalC11orf68 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf68  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf68
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf68
DgiDB (Drug Gene Interaction Database)C11orf68
DoCM (Curated mutations)C11orf68 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf68 (select a term)
intoGenC11orf68
Cancer3DC11orf68(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf68
Genetic Testing Registry C11orf68
NextProtQ9H3H3 [Medical]
TSGene83638
GENETestsC11orf68
Target ValidationC11orf68
Huge Navigator C11orf68 [HugePedia]
snp3D : Map Gene to Disease83638
BioCentury BCIQC11orf68
ClinGenC11orf68
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83638
Chemical/Pharm GKB GenePA144596487
Clinical trialC11orf68
Miscellaneous
canSAR (ICR)C11orf68 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf68
EVEXC11orf68
GoPubMedC11orf68
iHOPC11orf68
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:58 CEST 2017

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