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C11orf70 (chromosome 11 open reading frame 70)

Identity

Alias_symbol (synonym)MGC13040
Other alias-
HGNC (Hugo) C11orf70
LocusID (NCBI) 85016
Atlas_Id 60893
Location 11q22.1  [Link to chromosome band 11q22]
Location_base_pair Starts at 102047438 and ends at 102076111 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DYNC2H1 (11q22.3) / C11orf70 (11q22.1)YAP1 (11q22.1) / C11orf70 (11q22.1)DYNC2H1 C11orf70
YAP1 C11orf70

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf70   28188
Cards
Entrez_Gene (NCBI)C11orf70  85016  chromosome 11 open reading frame 70
Aliases
GeneCards (Weizmann)C11orf70
Ensembl hg19 (Hinxton)ENSG00000137691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137691 [Gene_View]  chr11:102047438-102076111 [Contig_View]  C11orf70 [Vega]
ICGC DataPortalENSG00000137691
TCGA cBioPortalC11orf70
AceView (NCBI)C11orf70
Genatlas (Paris)C11orf70
WikiGenes85016
SOURCE (Princeton)C11orf70
Genetics Home Reference (NIH)C11orf70
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf70  -     chr11:102047438-102076111 +  11q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf70  -     11q22.1   [Description]    (hg19-Feb_2009)
EnsemblC11orf70 - 11q22.1 [CytoView hg19]  C11orf70 - 11q22.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf70 [Mapview hg19]  C11orf70 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094851 BC006128 BC054869 BG700929
RefSeq transcript (Entrez)NM_001195005 NM_032930
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf70
Cluster EST : UnigeneHs.98328 [ NCBI ]
CGAP (NCI)Hs.98328
Alternative Splicing GalleryENSG00000137691
Gene ExpressionC11orf70 [ NCBI-GEO ]   C11orf70 [ EBI - ARRAY_EXPRESS ]   C11orf70 [ SEEK ]   C11orf70 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf70 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85016
GTEX Portal (Tissue expression)C11orf70
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRQ4
Splice isoforms : SwissVarQ9BRQ4
PhosPhoSitePlusQ9BRQ4
Domains : Interpro (EBI)DUF4498   
Domain families : Pfam (Sanger)DUF4498 (PF14926)   
Domain families : Pfam (NCBI)pfam14926   
Conserved Domain (NCBI)C11orf70
DMDM Disease mutations85016
Blocks (Seattle)C11orf70
SuperfamilyQ9BRQ4
Human Protein AtlasENSG00000137691
Peptide AtlasQ9BRQ4
HPRD14433
IPIIPI00015068   IPI00828163   IPI00384937   IPI00982979   IPI00981884   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRQ4
IntAct (EBI)Q9BRQ4
FunCoupENSG00000137691
BioGRIDC11orf70
STRING (EMBL)C11orf70
ZODIACC11orf70
Ontologies - Pathways
QuickGOQ9BRQ4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf70
Atlas of Cancer Signalling NetworkC11orf70
Wikipedia pathwaysC11orf70
Orthology - Evolution
OrthoDB85016
GeneTree (enSembl)ENSG00000137691
Phylogenetic Trees/Animal Genes : TreeFamC11orf70
HOVERGENQ9BRQ4
HOGENOMQ9BRQ4
Homologs : HomoloGeneC11orf70
Homology/Alignments : Family Browser (UCSC)C11orf70
Gene fusions - Rearrangements
Fusion: TCGADYNC2H1 C11orf70
Fusion: TCGAYAP1 C11orf70
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf70 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf70
dbVarC11orf70
ClinVarC11orf70
1000_GenomesC11orf70 
Exome Variant ServerC11orf70
ExAC (Exome Aggregation Consortium)C11orf70 (select the gene name)
Genetic variants : HAPMAP85016
Genomic Variants (DGV)C11orf70 [DGVbeta]
DECIPHERC11orf70 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf70 
Mutations
ICGC Data PortalC11orf70 
TCGA Data PortalC11orf70 
Broad Tumor PortalC11orf70
OASIS PortalC11orf70 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf70  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf70
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf70
DgiDB (Drug Gene Interaction Database)C11orf70
DoCM (Curated mutations)C11orf70 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf70 (select a term)
intoGenC11orf70
Cancer3DC11orf70(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf70
Genetic Testing Registry C11orf70
NextProtQ9BRQ4 [Medical]
TSGene85016
GENETestsC11orf70
Target ValidationC11orf70
Huge Navigator C11orf70 [HugePedia]
snp3D : Map Gene to Disease85016
BioCentury BCIQC11orf70
ClinGenC11orf70
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85016
Chemical/Pharm GKB GenePA144596489
Clinical trialC11orf70
Miscellaneous
canSAR (ICR)C11orf70 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf70
EVEXC11orf70
GoPubMedC11orf70
iHOPC11orf70
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:12 CEST 2017

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