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C11orf71 (chromosome 11 open reading frame 71)

Identity

Alias_symbol (synonym)FLJ20010
Other aliasURLC7
HGNC (Hugo) C11orf71
LocusID (NCBI) 54494
Atlas_Id 60894
Location 11q23.2  [Link to chromosome band 11q23]
Location_base_pair Starts at 114398534 and ends at 114400550 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf71 (11q23.2) / LOXHD1 (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf71   25937
Cards
Entrez_Gene (NCBI)C11orf71  54494  chromosome 11 open reading frame 71
AliasesURLC7
GeneCards (Weizmann)C11orf71
Ensembl hg19 (Hinxton)ENSG00000180425 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180425 [Gene_View]  chr11:114398534-114400550 [Contig_View]  C11orf71 [Vega]
ICGC DataPortalENSG00000180425
TCGA cBioPortalC11orf71
AceView (NCBI)C11orf71
Genatlas (Paris)C11orf71
WikiGenes54494
SOURCE (Princeton)C11orf71
Genetics Home Reference (NIH)C11orf71
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf71  -     chr11:114398534-114400550 -  11q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf71  -     11q23.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf71 - 11q23.2 [CytoView hg19]  C11orf71 - 11q23.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf71 [Mapview hg19]  C11orf71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB101209 AK000017 BC009041 BC071695 CR457222
RefSeq transcript (Entrez)NM_001271562 NM_019021
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf71
Cluster EST : UnigeneHs.715083 [ NCBI ]
CGAP (NCI)Hs.715083
Alternative Splicing GalleryENSG00000180425
Gene ExpressionC11orf71 [ NCBI-GEO ]   C11orf71 [ EBI - ARRAY_EXPRESS ]   C11orf71 [ SEEK ]   C11orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54494
GTEX Portal (Tissue expression)C11orf71
Human Protein AtlasENSG00000180425-C11orf71 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPW1
Splice isoforms : SwissVarQ6IPW1
PhosPhoSitePlusQ6IPW1
Domains : Interpro (EBI)DUF4687   
Domain families : Pfam (Sanger)DUF4687 (PF15747)   
Domain families : Pfam (NCBI)pfam15747   
Conserved Domain (NCBI)C11orf71
DMDM Disease mutations54494
Blocks (Seattle)C11orf71
SuperfamilyQ6IPW1
Human Protein Atlas [tissue]ENSG00000180425-C11orf71 [tissue]
Peptide AtlasQ6IPW1
HPRD07874
IPIIPI00828112   IPI00450969   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPW1
IntAct (EBI)Q6IPW1
FunCoupENSG00000180425
BioGRIDC11orf71
STRING (EMBL)C11orf71
ZODIACC11orf71
Ontologies - Pathways
QuickGOQ6IPW1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf71
Atlas of Cancer Signalling NetworkC11orf71
Wikipedia pathwaysC11orf71
Orthology - Evolution
OrthoDB54494
GeneTree (enSembl)ENSG00000180425
Phylogenetic Trees/Animal Genes : TreeFamC11orf71
HOVERGENQ6IPW1
HOGENOMQ6IPW1
Homologs : HomoloGeneC11orf71
Homology/Alignments : Family Browser (UCSC)C11orf71
Gene fusions - Rearrangements
Tumor Fusion PortalC11orf71
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf71
dbVarC11orf71
ClinVarC11orf71
1000_GenomesC11orf71 
Exome Variant ServerC11orf71
ExAC (Exome Aggregation Consortium)ENSG00000180425
GNOMAD BrowserENSG00000180425
Genetic variants : HAPMAP54494
Genomic Variants (DGV)C11orf71 [DGVbeta]
DECIPHERC11orf71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf71 
Mutations
ICGC Data PortalC11orf71 
TCGA Data PortalC11orf71 
Broad Tumor PortalC11orf71
OASIS PortalC11orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf71
DgiDB (Drug Gene Interaction Database)C11orf71
DoCM (Curated mutations)C11orf71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf71 (select a term)
intoGenC11orf71
Cancer3DC11orf71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC11orf71
MedgenC11orf71
Genetic Testing Registry C11orf71
NextProtQ6IPW1 [Medical]
TSGene54494
GENETestsC11orf71
Target ValidationC11orf71
Huge Navigator C11orf71 [HugePedia]
snp3D : Map Gene to Disease54494
BioCentury BCIQC11orf71
ClinGenC11orf71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54494
Chemical/Pharm GKB GenePA144596490
Clinical trialC11orf71
Miscellaneous
canSAR (ICR)C11orf71 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf71
EVEXC11orf71
GoPubMedC11orf71
iHOPC11orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:23:07 CET 2017

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