Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf72 (chromosome 11 open reading frame 72)

Identity

Alias_symbol (synonym)FLJ90834
Other alias-
HGNC (Hugo) C11orf72
LocusID (NCBI) 100505621
Atlas_Id 60895
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67602880 and ends at 67606706 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf72   26915
Cards
Entrez_Gene (NCBI)C11orf72  100505621  chromosome 11 open reading frame 72
Aliases
GeneCards (Weizmann)C11orf72
Ensembl hg19 (Hinxton)ENSG00000184224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184224 [Gene_View]  chr11:67602880-67606706 [Contig_View]  C11orf72 [Vega]
ICGC DataPortalENSG00000184224
TCGA cBioPortalC11orf72
AceView (NCBI)C11orf72
Genatlas (Paris)C11orf72
WikiGenes100505621
SOURCE (Princeton)C11orf72
Genetics Home Reference (NIH)C11orf72
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf72  -     chr11:67602880-67606706 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf72  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf72 - 11q13.2 [CytoView hg19]  C11orf72 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf72 [Mapview hg19]  C11orf72 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075315 BC104448 BC104449
RefSeq transcript (Entrez)NM_173578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf72
Cluster EST : UnigeneHs.382074 [ NCBI ]
CGAP (NCI)Hs.382074
Alternative Splicing GalleryENSG00000184224
Gene ExpressionC11orf72 [ NCBI-GEO ]   C11orf72 [ EBI - ARRAY_EXPRESS ]   C11orf72 [ SEEK ]   C11orf72 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505621
GTEX Portal (Tissue expression)C11orf72
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBR9
Splice isoforms : SwissVarQ8NBR9
PhosPhoSitePlusQ8NBR9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf72
DMDM Disease mutations100505621
Blocks (Seattle)C11orf72
SuperfamilyQ8NBR9
Human Protein AtlasENSG00000184224
Peptide AtlasQ8NBR9
IPIIPI00168307   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBR9
IntAct (EBI)Q8NBR9
FunCoupENSG00000184224
BioGRIDC11orf72
STRING (EMBL)C11orf72
ZODIACC11orf72
Ontologies - Pathways
QuickGOQ8NBR9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf72
Atlas of Cancer Signalling NetworkC11orf72
Wikipedia pathwaysC11orf72
Orthology - Evolution
OrthoDB100505621
GeneTree (enSembl)ENSG00000184224
Phylogenetic Trees/Animal Genes : TreeFamC11orf72
HOVERGENQ8NBR9
HOGENOMQ8NBR9
Homologs : HomoloGeneC11orf72
Homology/Alignments : Family Browser (UCSC)C11orf72
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf72
dbVarC11orf72
ClinVarC11orf72
1000_GenomesC11orf72 
Exome Variant ServerC11orf72
ExAC (Exome Aggregation Consortium)C11orf72 (select the gene name)
Genetic variants : HAPMAP100505621
Genomic Variants (DGV)C11orf72 [DGVbeta]
DECIPHERC11orf72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf72 
Mutations
ICGC Data PortalC11orf72 
TCGA Data PortalC11orf72 
Broad Tumor PortalC11orf72
OASIS PortalC11orf72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf72
BioMutasearch C11orf72
DgiDB (Drug Gene Interaction Database)C11orf72
DoCM (Curated mutations)C11orf72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf72 (select a term)
intoGenC11orf72
Cancer3DC11orf72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf72
Genetic Testing Registry C11orf72
NextProtQ8NBR9 [Medical]
TSGene100505621
GENETestsC11orf72
Target ValidationC11orf72
Huge Navigator C11orf72 [HugePedia]
snp3D : Map Gene to Disease100505621
BioCentury BCIQC11orf72
ClinGenC11orf72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505621
Chemical/Pharm GKB GenePA144596491
Clinical trialC11orf72
Miscellaneous
canSAR (ICR)C11orf72 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf72
EVEXC11orf72
GoPubMedC11orf72
iHOPC11orf72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:40 CEST 2017

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