Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf73 (chromosome 11 open reading frame 73)

Identity

Other aliasHLD13
HSPC138
HSPC179
Hikeshi
L7RN6
OPI10
HGNC (Hugo) C11orf73
LocusID (NCBI) 51501
Atlas_Id 54162
Location 11q14.2  [Link to chromosome band 11q14]
Location_base_pair Starts at 86013253 and ends at 86056985 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C11orf73 (11q14.2) / PICALM (11q14.2)C11orf73 (11q14.2) / TENM1 (Xq25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf73   26938
Cards
Entrez_Gene (NCBI)C11orf73  51501  chromosome 11 open reading frame 73
AliasesHLD13; HSPC138; HSPC179; Hikeshi; 
L7RN6; OPI10
GeneCards (Weizmann)C11orf73
Ensembl hg19 (Hinxton)ENSG00000149196 [Gene_View]  chr11:86013253-86056985 [Contig_View]  C11orf73 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149196 [Gene_View]  chr11:86013253-86056985 [Contig_View]  C11orf73 [Vega]
ICGC DataPortalENSG00000149196
TCGA cBioPortalC11orf73
AceView (NCBI)C11orf73
Genatlas (Paris)C11orf73
WikiGenes51501
SOURCE (Princeton)C11orf73
Genetics Home Reference (NIH)C11orf73
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf73  -     chr11:86013253-86056985 +  11q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf73  -     11q14.2   [Description]    (hg38-Dec_2013)
EnsemblC11orf73 - 11q14.2 [CytoView hg19]  C11orf73 - 11q14.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf73 [Mapview hg19]  C11orf73 [Mapview hg38]
OMIM614908   
Gene and transcription
Genbank (Entrez)AA148558 AF151082 AF161487 AF161527 AK001447
RefSeq transcript (Entrez)NM_001322404 NM_001322407 NM_001322409 NM_016401
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_046865 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)C11orf73
Cluster EST : UnigeneHs.283322 [ NCBI ]
CGAP (NCI)Hs.283322
Alternative Splicing GalleryENSG00000149196
Gene ExpressionC11orf73 [ NCBI-GEO ]   C11orf73 [ EBI - ARRAY_EXPRESS ]   C11orf73 [ SEEK ]   C11orf73 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf73 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51501
GTEX Portal (Tissue expression)C11orf73
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53FT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53FT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53FT3
Splice isoforms : SwissVarQ53FT3
PhosPhoSitePlusQ53FT3
Domains : Interpro (EBI)DUF775    OPI10   
Domain families : Pfam (Sanger)DUF775 (PF05603)   
Domain families : Pfam (NCBI)pfam05603   
Conserved Domain (NCBI)C11orf73
DMDM Disease mutations51501
Blocks (Seattle)C11orf73
PDB (SRS)3WVZ    3WW0   
PDB (PDBSum)3WVZ    3WW0   
PDB (IMB)3WVZ    3WW0   
PDB (RSDB)3WVZ    3WW0   
Structural Biology KnowledgeBase3WVZ    3WW0   
SCOP (Structural Classification of Proteins)3WVZ    3WW0   
CATH (Classification of proteins structures)3WVZ    3WW0   
SuperfamilyQ53FT3
Human Protein AtlasENSG00000149196
Peptide AtlasQ53FT3
HPRD13701
IPIIPI00410091   IPI00981648   IPI00977841   
Protein Interaction databases
DIP (DOE-UCLA)Q53FT3
IntAct (EBI)Q53FT3
FunCoupENSG00000149196
BioGRIDC11orf73
STRING (EMBL)C11orf73
ZODIACC11orf73
Ontologies - Pathways
QuickGOQ53FT3
Ontology : AmiGOintracellular  nucleus  nucleoplasm  cytosol  cytosol  protein import into nucleus  protein transporter activity  protein transport  cell junction  Hsp70 protein binding  cellular response to heat  extracellular exosome  regulation of cellular response to heat  
Ontology : EGO-EBIintracellular  nucleus  nucleoplasm  cytosol  cytosol  protein import into nucleus  protein transporter activity  protein transport  cell junction  Hsp70 protein binding  cellular response to heat  extracellular exosome  regulation of cellular response to heat  
NDEx NetworkC11orf73
Atlas of Cancer Signalling NetworkC11orf73
Wikipedia pathwaysC11orf73
Orthology - Evolution
OrthoDB51501
GeneTree (enSembl)ENSG00000149196
Phylogenetic Trees/Animal Genes : TreeFamC11orf73
HOVERGENQ53FT3
HOGENOMQ53FT3
Homologs : HomoloGeneC11orf73
Homology/Alignments : Family Browser (UCSC)C11orf73
Gene fusions - Rearrangements
Fusion : MitelmanC11orf73/TENM1 [11q14.2/Xq25]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf73 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf73
dbVarC11orf73
ClinVarC11orf73
1000_GenomesC11orf73 
Exome Variant ServerC11orf73
ExAC (Exome Aggregation Consortium)C11orf73 (select the gene name)
Genetic variants : HAPMAP51501
Genomic Variants (DGV)C11orf73 [DGVbeta]
DECIPHER (Syndromes)11:86013253-86056985  ENSG00000149196
CONAN: Copy Number AnalysisC11orf73 
Mutations
ICGC Data PortalC11orf73 
TCGA Data PortalC11orf73 
Broad Tumor PortalC11orf73
OASIS PortalC11orf73 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf73  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf73
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf73
DgiDB (Drug Gene Interaction Database)C11orf73
DoCM (Curated mutations)C11orf73 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf73 (select a term)
intoGenC11orf73
Cancer3DC11orf73(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614908   
Orphanet
MedgenC11orf73
Genetic Testing Registry C11orf73
NextProtQ53FT3 [Medical]
TSGene51501
GENETestsC11orf73
Huge Navigator C11orf73 [HugePedia]
snp3D : Map Gene to Disease51501
BioCentury BCIQC11orf73
ClinGenC11orf73
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51501
Chemical/Pharm GKB GenePA144596492
Clinical trialC11orf73
Miscellaneous
canSAR (ICR)C11orf73 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf73
EVEXC11orf73
GoPubMedC11orf73
iHOPC11orf73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:23 CEST 2017

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