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C11orf74 (chromosome 11 open reading frame 74)

Identity

Alias_symbol (synonym)FLJ38678
HEPIS
NWC
Other alias
HGNC (Hugo) C11orf74
LocusID (NCBI) 119710
Atlas_Id 60896
Location 11p12  [Link to chromosome band 11p12]
Location_base_pair Starts at 36594493 and ends at 36659291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LDLRAD3 (11p13) / C11orf74 (11p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf74   25142
Cards
Entrez_Gene (NCBI)C11orf74  119710  chromosome 11 open reading frame 74
AliasesHEPIS; NWC
GeneCards (Weizmann)C11orf74
Ensembl hg19 (Hinxton)ENSG00000166352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166352 [Gene_View]  chr11:36594493-36659291 [Contig_View]  C11orf74 [Vega]
ICGC DataPortalENSG00000166352
TCGA cBioPortalC11orf74
AceView (NCBI)C11orf74
Genatlas (Paris)C11orf74
WikiGenes119710
SOURCE (Princeton)C11orf74
Genetics Home Reference (NIH)C11orf74
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf74  -     chr11:36594493-36659291 +  11p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf74  -     11p12   [Description]    (hg19-Feb_2009)
EnsemblC11orf74 - 11p12 [CytoView hg19]  C11orf74 - 11p12 [CytoView hg38]
Mapping of homologs : NCBIC11orf74 [Mapview hg19]  C11orf74 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095997 AK290833 AK299642 AK302634 BC009561
RefSeq transcript (Entrez)NM_001276722 NM_001276723 NM_001276724 NM_001276725 NM_001276726 NM_001276727 NM_138787
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf74
Cluster EST : UnigeneHs.159376 [ NCBI ]
CGAP (NCI)Hs.159376
Alternative Splicing GalleryENSG00000166352
Gene ExpressionC11orf74 [ NCBI-GEO ]   C11orf74 [ EBI - ARRAY_EXPRESS ]   C11orf74 [ SEEK ]   C11orf74 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf74 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119710
GTEX Portal (Tissue expression)C11orf74
Human Protein AtlasENSG00000166352-C11orf74 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VG3
Splice isoforms : SwissVarQ86VG3
PhosPhoSitePlusQ86VG3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf74
DMDM Disease mutations119710
Blocks (Seattle)C11orf74
SuperfamilyQ86VG3
Human Protein Atlas [tissue]ENSG00000166352-C11orf74 [tissue]
Peptide AtlasQ86VG3
HPRD14019
IPIIPI00384314   IPI00060869   IPI00981354   IPI00982636   IPI00981279   IPI00909216   IPI00984037   
Protein Interaction databases
DIP (DOE-UCLA)Q86VG3
IntAct (EBI)Q86VG3
FunCoupENSG00000166352
BioGRIDC11orf74
STRING (EMBL)C11orf74
ZODIACC11orf74
Ontologies - Pathways
QuickGOQ86VG3
Ontology : AmiGOcilium  
Ontology : EGO-EBIcilium  
NDEx NetworkC11orf74
Atlas of Cancer Signalling NetworkC11orf74
Wikipedia pathwaysC11orf74
Orthology - Evolution
OrthoDB119710
GeneTree (enSembl)ENSG00000166352
Phylogenetic Trees/Animal Genes : TreeFamC11orf74
HOVERGENQ86VG3
HOGENOMQ86VG3
Homologs : HomoloGeneC11orf74
Homology/Alignments : Family Browser (UCSC)C11orf74
Gene fusions - Rearrangements
Fusion: Tumor Portal C11orf74
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf74 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf74
dbVarC11orf74
ClinVarC11orf74
1000_GenomesC11orf74 
Exome Variant ServerC11orf74
ExAC (Exome Aggregation Consortium)ENSG00000166352
GNOMAD BrowserENSG00000166352
Genetic variants : HAPMAP119710
Genomic Variants (DGV)C11orf74 [DGVbeta]
DECIPHERC11orf74 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf74 
Mutations
ICGC Data PortalC11orf74 
TCGA Data PortalC11orf74 
Broad Tumor PortalC11orf74
OASIS PortalC11orf74 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf74  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf74
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf74
DgiDB (Drug Gene Interaction Database)C11orf74
DoCM (Curated mutations)C11orf74 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf74 (select a term)
intoGenC11orf74
Cancer3DC11orf74(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf74
Genetic Testing Registry C11orf74
NextProtQ86VG3 [Medical]
TSGene119710
GENETestsC11orf74
Target ValidationC11orf74
Huge Navigator C11orf74 [HugePedia]
snp3D : Map Gene to Disease119710
BioCentury BCIQC11orf74
ClinGenC11orf74
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119710
Chemical/Pharm GKB GenePA144596493
Clinical trialC11orf74
Miscellaneous
canSAR (ICR)C11orf74 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf74
EVEXC11orf74
GoPubMedC11orf74
iHOPC11orf74
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:34 CET 2017

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