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C11orf80 (chromosome 11 open reading frame 80)

Identity

Alias_symbol (synonym)FLJ22531
TOPOVIBL
Other aliasTOP6BL
HGNC (Hugo) C11orf80
LocusID (NCBI) 79703
Atlas_Id 60897
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66744736 and ends at 66843516 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf80 (11q13.2) / BBS1 (11q13.2)C11orf80 (11q13.2) / RBM14 (11q13.2)C11orf80 (11q13.2) / TARDBP (1p36.22)
F3 (1p21.3) / C11orf80 (11q13.2)KDM2A (11q13.2) / C11orf80 (11q13.2)NFX1 (9p13.3) / C11orf80 (11q13.2)
PCNX3 (11q13.1) / C11orf80 (11q13.2)TMX2 (11q12.1) / C11orf80 (11q13.2)TMX2 C11orf80
PCNXL3 C11orf80KDM2A C11orf80C11orf80 BBS1
C11orf80 RBM14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf80   26197
Cards
Entrez_Gene (NCBI)C11orf80  79703  chromosome 11 open reading frame 80
AliasesTOP6BL; TOPOVIBL
GeneCards (Weizmann)C11orf80
Ensembl hg19 (Hinxton)ENSG00000173715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173715 [Gene_View]  chr11:66744736-66843516 [Contig_View]  C11orf80 [Vega]
ICGC DataPortalENSG00000173715
TCGA cBioPortalC11orf80
AceView (NCBI)C11orf80
Genatlas (Paris)C11orf80
WikiGenes79703
SOURCE (Princeton)C11orf80
Genetics Home Reference (NIH)C11orf80
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf80  -     chr11:66744736-66843516 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf80  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf80 - 11q13.2 [CytoView hg19]  C11orf80 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf80 [Mapview hg19]  C11orf80 [Mapview hg38]
OMIM616109   
Gene and transcription
Genbank (Entrez)AK026184 AK225435 AK302025 BC028240 BE676873
RefSeq transcript (Entrez)NM_001302084 NM_024650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf80
Cluster EST : UnigeneHs.292088 [ NCBI ]
CGAP (NCI)Hs.292088
Alternative Splicing GalleryENSG00000173715
Gene ExpressionC11orf80 [ NCBI-GEO ]   C11orf80 [ EBI - ARRAY_EXPRESS ]   C11orf80 [ SEEK ]   C11orf80 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79703
GTEX Portal (Tissue expression)C11orf80
Human Protein AtlasENSG00000173715-C11orf80 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6T0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6T0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6T0
Splice isoforms : SwissVarQ8N6T0
PhosPhoSitePlusQ8N6T0
Domains : Interpro (EBI)TopoVIB-like   
Domain families : Pfam (Sanger)DUF4554 (PF15091)   
Domain families : Pfam (NCBI)pfam15091   
Conserved Domain (NCBI)C11orf80
DMDM Disease mutations79703
Blocks (Seattle)C11orf80
SuperfamilyQ8N6T0
Human Protein Atlas [tissue]ENSG00000173715-C11orf80 [tissue]
Peptide AtlasQ8N6T0
HPRD07993
IPIIPI00167079   IPI00983990   IPI00982223   IPI00981376   IPI00979929   IPI00983384   IPI00981658   IPI00002886   IPI00982791   IPI00980489   IPI00982104   IPI00978665   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6T0
IntAct (EBI)Q8N6T0
FunCoupENSG00000173715
BioGRIDC11orf80
STRING (EMBL)C11orf80
ZODIACC11orf80
Ontologies - Pathways
QuickGOQ8N6T0
Ontology : AmiGOchromosome  reciprocal meiotic recombination  meiotic DNA double-strand break formation  
Ontology : EGO-EBIchromosome  reciprocal meiotic recombination  meiotic DNA double-strand break formation  
NDEx NetworkC11orf80
Atlas of Cancer Signalling NetworkC11orf80
Wikipedia pathwaysC11orf80
Orthology - Evolution
OrthoDB79703
GeneTree (enSembl)ENSG00000173715
Phylogenetic Trees/Animal Genes : TreeFamC11orf80
HOVERGENQ8N6T0
HOGENOMQ8N6T0
Homologs : HomoloGeneC11orf80
Homology/Alignments : Family Browser (UCSC)C11orf80
Gene fusions - Rearrangements
Fusion: TCGATMX2 C11orf80
Fusion: TCGAPCNXL3 C11orf80
Fusion: TCGAKDM2A C11orf80
Fusion: TCGAC11orf80 BBS1
Fusion: TCGAC11orf80 RBM14
Fusion: Tumor Portal C11orf80
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf80
dbVarC11orf80
ClinVarC11orf80
1000_GenomesC11orf80 
Exome Variant ServerC11orf80
ExAC (Exome Aggregation Consortium)ENSG00000173715
GNOMAD BrowserENSG00000173715
Genetic variants : HAPMAP79703
Genomic Variants (DGV)C11orf80 [DGVbeta]
DECIPHERC11orf80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf80 
Mutations
ICGC Data PortalC11orf80 
TCGA Data PortalC11orf80 
Broad Tumor PortalC11orf80
OASIS PortalC11orf80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf80
DgiDB (Drug Gene Interaction Database)C11orf80
DoCM (Curated mutations)C11orf80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf80 (select a term)
intoGenC11orf80
Cancer3DC11orf80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616109   
Orphanet
MedgenC11orf80
Genetic Testing Registry C11orf80
NextProtQ8N6T0 [Medical]
TSGene79703
GENETestsC11orf80
Target ValidationC11orf80
Huge Navigator C11orf80 [HugePedia]
snp3D : Map Gene to Disease79703
BioCentury BCIQC11orf80
ClinGenC11orf80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79703
Chemical/Pharm GKB GenePA162377704
Clinical trialC11orf80
Miscellaneous
canSAR (ICR)C11orf80 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf80
EVEXC11orf80
GoPubMedC11orf80
iHOPC11orf80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:34 CET 2017

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