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C11orf80 (chromosome 11 open reading frame 80)

Identity

Alias (NCBI)HYDM4
TOP6BL
TOPOVIBL
HGNC (Hugo) C11orf80
HGNC Alias symbFLJ22531
TOPOVIBL
LocusID (NCBI) 79703
Atlas_Id 60897
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66744736 and ends at 66843516 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf80 (11q13.2) / BBS1 (11q13.2)C11orf80 (11q13.2) / RBM14 (11q13.2)C11orf80 (11q13.2) / TARDBP (1p36.22)
F3 (1p21.3) / C11orf80 (11q13.2)KDM2A (11q13.2) / C11orf80 (11q13.2)NFX1 (9p13.3) / C11orf80 (11q13.2)
PCNX3 (11q13.1) / C11orf80 (11q13.2)TMX2 (11q12.1) / C11orf80 (11q13.2)TMX2 C11orf80
PCNXL3 C11orf80KDM2A C11orf80C11orf80 BBS1
C11orf80 RBM14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C11orf80   26197
Cards
Entrez_Gene (NCBI)C11orf80    chromosome 11 open reading frame 80
AliasesHYDM4; TOP6BL; TOPOVIBL
GeneCards (Weizmann)C11orf80
Ensembl hg19 (Hinxton)ENSG00000173715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173715 [Gene_View]  ENSG00000173715 [Sequence]  chr11:66744736-66843516 [Contig_View]  C11orf80 [Vega]
ICGC DataPortalENSG00000173715
TCGA cBioPortalC11orf80
AceView (NCBI)C11orf80
Genatlas (Paris)C11orf80
SOURCE (Princeton)C11orf80
Genetics Home Reference (NIH)C11orf80
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf80  -     chr11:66744736-66843516 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf80  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathC11orf80 - 11q13.2 [CytoView hg19]  C11orf80 - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000173715
Genome Data Viewer NCBIC11orf80 [Mapview hg19]  
OMIM616109   618432   
Gene and transcription
Genbank (Entrez)AK026184 AK225435 AK302025 BC028240 BE676873
RefSeq transcript (Entrez)NM_001302084 NM_024650
Consensus coding sequences : CCDS (NCBI)C11orf80
Gene ExpressionC11orf80 [ NCBI-GEO ]   C11orf80 [ EBI - ARRAY_EXPRESS ]   C11orf80 [ SEEK ]   C11orf80 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf80 [ Firebrowse - Broad ]
GenevisibleExpression of C11orf80 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79703
GTEX Portal (Tissue expression)C11orf80
Human Protein AtlasENSG00000173715-C11orf80 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6T0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6T0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6T0
PhosPhoSitePlusQ8N6T0
Domains : Interpro (EBI)TopoVIB-like   
Domain families : Pfam (Sanger)DUF4554 (PF15091)   
Domain families : Pfam (NCBI)pfam15091   
Conserved Domain (NCBI)C11orf80
SuperfamilyQ8N6T0
AlphaFold pdb e-kbQ8N6T0   
Human Protein Atlas [tissue]ENSG00000173715-C11orf80 [tissue]
HPRD07993
Protein Interaction databases
DIP (DOE-UCLA)Q8N6T0
IntAct (EBI)Q8N6T0
BioGRIDC11orf80
STRING (EMBL)C11orf80
ZODIACC11orf80
Ontologies - Pathways
QuickGOQ8N6T0
Ontology : AmiGOchromosome  reciprocal meiotic recombination  reciprocal meiotic recombination  meiotic DNA double-strand break formation  meiotic DNA double-strand break formation  
Ontology : EGO-EBIchromosome  reciprocal meiotic recombination  reciprocal meiotic recombination  meiotic DNA double-strand break formation  meiotic DNA double-strand break formation  
NDEx NetworkC11orf80
Atlas of Cancer Signalling NetworkC11orf80
Wikipedia pathwaysC11orf80
Orthology - Evolution
OrthoDB79703
GeneTree (enSembl)ENSG00000173715
Phylogenetic Trees/Animal Genes : TreeFamC11orf80
Homologs : HomoloGeneC11orf80
Homology/Alignments : Family Browser (UCSC)C11orf80
Gene fusions - Rearrangements
Fusion : QuiverC11orf80
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf80
dbVarC11orf80
ClinVarC11orf80
MonarchC11orf80
1000_GenomesC11orf80 
Exome Variant ServerC11orf80
GNOMAD BrowserENSG00000173715
Varsome BrowserC11orf80
ACMGC11orf80 variants
VarityQ8N6T0
Genomic Variants (DGV)C11orf80 [DGVbeta]
DECIPHERC11orf80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf80 
Mutations
ICGC Data PortalC11orf80 
TCGA Data PortalC11orf80 
Broad Tumor PortalC11orf80
OASIS PortalC11orf80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf80  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC11orf80
Mutations and Diseases : HGMDC11orf80
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC11orf80
DgiDB (Drug Gene Interaction Database)C11orf80
DoCM (Curated mutations)C11orf80
CIViC (Clinical Interpretations of Variants in Cancer)C11orf80
Cancer3DC11orf80
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616109    618432   
Orphanet
DisGeNETC11orf80
MedgenC11orf80
Genetic Testing Registry C11orf80
NextProtQ8N6T0 [Medical]
GENETestsC11orf80
Target ValidationC11orf80
Huge Navigator C11orf80 [HugePedia]
ClinGenC11orf80
Clinical trials, drugs, therapy
MyCancerGenomeC11orf80
Protein Interactions : CTDC11orf80
Pharm GKB GenePA162377704
PharosQ8N6T0
Clinical trialC11orf80
Miscellaneous
canSAR (ICR)C11orf80
HarmonizomeC11orf80
DataMed IndexC11orf80
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC11orf80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:45 CEST 2021

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