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C11orf84 (chromosome 11 open reading frame 84)

Identity

Other alias-
HGNC (Hugo) C11orf84
LocusID (NCBI) 144097
Atlas_Id 60898
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63580846 and ends at 63595190 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C11orf84 (11q13.1) / C11orf84 (11q13.1)PPP6C (9q33.3) / C11orf84 (11q13.1)RIC8B (12q23.3) / C11orf84 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf84   25115
Cards
Entrez_Gene (NCBI)C11orf84  144097  chromosome 11 open reading frame 84
Aliases
GeneCards (Weizmann)C11orf84
Ensembl hg19 (Hinxton)ENSG00000168005 [Gene_View]  chr11:63580846-63595190 [Contig_View]  C11orf84 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168005 [Gene_View]  chr11:63580846-63595190 [Contig_View]  C11orf84 [Vega]
ICGC DataPortalENSG00000168005
TCGA cBioPortalC11orf84
AceView (NCBI)C11orf84
Genatlas (Paris)C11orf84
WikiGenes144097
SOURCE (Princeton)C11orf84
Genetics Home Reference (NIH)C11orf84
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf84  -     chr11:63580846-63595190 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf84  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblC11orf84 - 11q13.1 [CytoView hg19]  C11orf84 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf84 [Mapview hg19]  C11orf84 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091493 AK092098 BC002782 BC007540 BC056402
RefSeq transcript (Entrez)NM_138471
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)C11orf84
Cluster EST : UnigeneHs.502793 [ NCBI ]
CGAP (NCI)Hs.502793
Alternative Splicing GalleryENSG00000168005
Gene ExpressionC11orf84 [ NCBI-GEO ]   C11orf84 [ EBI - ARRAY_EXPRESS ]   C11orf84 [ SEEK ]   C11orf84 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144097
GTEX Portal (Tissue expression)C11orf84
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUA3
Splice isoforms : SwissVarQ9BUA3
PhosPhoSitePlusQ9BUA3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf84
DMDM Disease mutations144097
Blocks (Seattle)C11orf84
SuperfamilyQ9BUA3
Human Protein AtlasENSG00000168005
Peptide AtlasQ9BUA3
HPRD14064
IPIIPI00106955   IPI01014669   IPI01010757   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUA3
IntAct (EBI)Q9BUA3
FunCoupENSG00000168005
BioGRIDC11orf84
STRING (EMBL)C11orf84
ZODIACC11orf84
Ontologies - Pathways
QuickGOQ9BUA3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf84
Atlas of Cancer Signalling NetworkC11orf84
Wikipedia pathwaysC11orf84
Orthology - Evolution
OrthoDB144097
GeneTree (enSembl)ENSG00000168005
Phylogenetic Trees/Animal Genes : TreeFamC11orf84
HOVERGENQ9BUA3
HOGENOMQ9BUA3
Homologs : HomoloGeneC11orf84
Homology/Alignments : Family Browser (UCSC)C11orf84
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf84
dbVarC11orf84
ClinVarC11orf84
1000_GenomesC11orf84 
Exome Variant ServerC11orf84
ExAC (Exome Aggregation Consortium)C11orf84 (select the gene name)
Genetic variants : HAPMAP144097
Genomic Variants (DGV)C11orf84 [DGVbeta]
DECIPHER (Syndromes)11:63580846-63595190  ENSG00000168005
CONAN: Copy Number AnalysisC11orf84 
Mutations
ICGC Data PortalC11orf84 
TCGA Data PortalC11orf84 
Broad Tumor PortalC11orf84
OASIS PortalC11orf84 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf84  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf84
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf84
DgiDB (Drug Gene Interaction Database)C11orf84
DoCM (Curated mutations)C11orf84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf84 (select a term)
intoGenC11orf84
Cancer3DC11orf84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf84
Genetic Testing Registry C11orf84
NextProtQ9BUA3 [Medical]
TSGene144097
GENETestsC11orf84
Huge Navigator C11orf84 [HugePedia]
snp3D : Map Gene to Disease144097
BioCentury BCIQC11orf84
ClinGenC11orf84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144097
Chemical/Pharm GKB GenePA162377769
Clinical trialC11orf84
Miscellaneous
canSAR (ICR)C11orf84 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf84
EVEXC11orf84
GoPubMedC11orf84
iHOPC11orf84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:22 CET 2017

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