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C11orf85 (chromosome 11 open reading frame 85)

Identity

Other alias-
HGNC (Hugo) C11orf85
LocusID (NCBI) 283129
Atlas_Id 60899
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64705702 and ends at 64739563 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SDHAF2 (11q12.2) / C11orf85 (11q13.1)SNX15 (11q13.1) / C11orf85 (11q13.1)SDHAF2 C11orf85
SNX15 C11orf85

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf85   27441
Cards
Entrez_Gene (NCBI)C11orf85  283129  chromosome 11 open reading frame 85
Aliases
GeneCards (Weizmann)C11orf85
Ensembl hg19 (Hinxton)ENSG00000168070 [Gene_View]  chr11:64705702-64739563 [Contig_View]  C11orf85 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168070 [Gene_View]  chr11:64705702-64739563 [Contig_View]  C11orf85 [Vega]
ICGC DataPortalENSG00000168070
TCGA cBioPortalC11orf85
AceView (NCBI)C11orf85
Genatlas (Paris)C11orf85
WikiGenes283129
SOURCE (Princeton)C11orf85
Genetics Home Reference (NIH)C11orf85
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf85  -     chr11:64705702-64739563 -  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf85  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblC11orf85 - 11q13.1 [CytoView hg19]  C11orf85 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf85 [Mapview hg19]  C11orf85 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093130 BC033501 BC106951 BC106952 DB445650
RefSeq transcript (Entrez)NM_001037225 NM_001300803
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)C11orf85
Cluster EST : UnigeneHs.567793 [ NCBI ]
CGAP (NCI)Hs.567793
Alternative Splicing GalleryENSG00000168070
Gene ExpressionC11orf85 [ NCBI-GEO ]   C11orf85 [ EBI - ARRAY_EXPRESS ]   C11orf85 [ SEEK ]   C11orf85 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf85 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283129
GTEX Portal (Tissue expression)C11orf85
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KP22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KP22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KP22
Splice isoforms : SwissVarQ3KP22
PhosPhoSitePlusQ3KP22
Domains : Interpro (EBI)DUF4544   
Domain families : Pfam (Sanger)DUF4544 (PF15077)   
Domain families : Pfam (NCBI)pfam15077   
Conserved Domain (NCBI)C11orf85
DMDM Disease mutations283129
Blocks (Seattle)C11orf85
SuperfamilyQ3KP22
Human Protein AtlasENSG00000168070
Peptide AtlasQ3KP22
HPRD18761
IPIIPI00176776   IPI00978230   IPI00978825   IPI00978125   
Protein Interaction databases
DIP (DOE-UCLA)Q3KP22
IntAct (EBI)Q3KP22
FunCoupENSG00000168070
BioGRIDC11orf85
STRING (EMBL)C11orf85
ZODIACC11orf85
Ontologies - Pathways
QuickGOQ3KP22
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf85
Atlas of Cancer Signalling NetworkC11orf85
Wikipedia pathwaysC11orf85
Orthology - Evolution
OrthoDB283129
GeneTree (enSembl)ENSG00000168070
Phylogenetic Trees/Animal Genes : TreeFamC11orf85
HOVERGENQ3KP22
HOGENOMQ3KP22
Homologs : HomoloGeneC11orf85
Homology/Alignments : Family Browser (UCSC)C11orf85
Gene fusions - Rearrangements
Fusion: TCGASDHAF2 C11orf85
Fusion: TCGASNX15 C11orf85
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf85 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf85
dbVarC11orf85
ClinVarC11orf85
1000_GenomesC11orf85 
Exome Variant ServerC11orf85
ExAC (Exome Aggregation Consortium)C11orf85 (select the gene name)
Genetic variants : HAPMAP283129
Genomic Variants (DGV)C11orf85 [DGVbeta]
DECIPHER (Syndromes)11:64705702-64739563  ENSG00000168070
CONAN: Copy Number AnalysisC11orf85 
Mutations
ICGC Data PortalC11orf85 
TCGA Data PortalC11orf85 
Broad Tumor PortalC11orf85
OASIS PortalC11orf85 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf85  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf85
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf85
DgiDB (Drug Gene Interaction Database)C11orf85
DoCM (Curated mutations)C11orf85 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf85 (select a term)
intoGenC11orf85
Cancer3DC11orf85(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf85
Genetic Testing Registry C11orf85
NextProtQ3KP22 [Medical]
TSGene283129
GENETestsC11orf85
Huge Navigator C11orf85 [HugePedia]
snp3D : Map Gene to Disease283129
BioCentury BCIQC11orf85
ClinGenC11orf85
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283129
Chemical/Pharm GKB GenePA162377786
Clinical trialC11orf85
Miscellaneous
canSAR (ICR)C11orf85 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf85
EVEXC11orf85
GoPubMedC11orf85
iHOPC11orf85
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:22 CET 2017

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