Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf86 (chromosome 11 open reading frame 86)

Identity

Alias_symbol (synonym)FLJ22675
Other alias-
HGNC (Hugo) C11orf86
LocusID (NCBI) 254439
Atlas_Id 60900
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66975283 and ends at 66977008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RHOD (11q13.2) / C11orf86 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf86   34442
Cards
Entrez_Gene (NCBI)C11orf86  254439  chromosome 11 open reading frame 86
Aliases
GeneCards (Weizmann)C11orf86
Ensembl hg19 (Hinxton)ENSG00000173237 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173237 [Gene_View]  chr11:66975283-66977008 [Contig_View]  C11orf86 [Vega]
ICGC DataPortalENSG00000173237
TCGA cBioPortalC11orf86
AceView (NCBI)C11orf86
Genatlas (Paris)C11orf86
WikiGenes254439
SOURCE (Princeton)C11orf86
Genetics Home Reference (NIH)C11orf86
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf86  -     chr11:66975283-66977008 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf86  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf86 - 11q13.2 [CytoView hg19]  C11orf86 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf86 [Mapview hg19]  C11orf86 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026328
RefSeq transcript (Entrez)NM_001136485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf86
Cluster EST : UnigeneHs.232604 [ NCBI ]
CGAP (NCI)Hs.232604
Alternative Splicing GalleryENSG00000173237
Gene ExpressionC11orf86 [ NCBI-GEO ]   C11orf86 [ EBI - ARRAY_EXPRESS ]   C11orf86 [ SEEK ]   C11orf86 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf86 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254439
GTEX Portal (Tissue expression)C11orf86
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJI1
Splice isoforms : SwissVarA6NJI1
PhosPhoSitePlusA6NJI1
Domains : Interpro (EBI)DUF4633   
Domain families : Pfam (Sanger)DUF4633 (PF15464)   
Domain families : Pfam (NCBI)pfam15464   
Conserved Domain (NCBI)C11orf86
DMDM Disease mutations254439
Blocks (Seattle)C11orf86
SuperfamilyA6NJI1
Human Protein AtlasENSG00000173237
Peptide AtlasA6NJI1
IPIIPI00157941   
Protein Interaction databases
DIP (DOE-UCLA)A6NJI1
IntAct (EBI)A6NJI1
FunCoupENSG00000173237
BioGRIDC11orf86
STRING (EMBL)C11orf86
ZODIACC11orf86
Ontologies - Pathways
QuickGOA6NJI1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf86
Atlas of Cancer Signalling NetworkC11orf86
Wikipedia pathwaysC11orf86
Orthology - Evolution
OrthoDB254439
GeneTree (enSembl)ENSG00000173237
Phylogenetic Trees/Animal Genes : TreeFamC11orf86
HOVERGENA6NJI1
HOGENOMA6NJI1
Homologs : HomoloGeneC11orf86
Homology/Alignments : Family Browser (UCSC)C11orf86
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf86 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf86
dbVarC11orf86
ClinVarC11orf86
1000_GenomesC11orf86 
Exome Variant ServerC11orf86
ExAC (Exome Aggregation Consortium)C11orf86 (select the gene name)
Genetic variants : HAPMAP254439
Genomic Variants (DGV)C11orf86 [DGVbeta]
DECIPHERC11orf86 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf86 
Mutations
ICGC Data PortalC11orf86 
TCGA Data PortalC11orf86 
Broad Tumor PortalC11orf86
OASIS PortalC11orf86 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf86  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf86
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf86
DgiDB (Drug Gene Interaction Database)C11orf86
DoCM (Curated mutations)C11orf86 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf86 (select a term)
intoGenC11orf86
Cancer3DC11orf86(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf86
Genetic Testing Registry C11orf86
NextProtA6NJI1 [Medical]
TSGene254439
GENETestsC11orf86
Target ValidationC11orf86
Huge Navigator C11orf86 [HugePedia]
snp3D : Map Gene to Disease254439
BioCentury BCIQC11orf86
ClinGenC11orf86
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254439
Chemical/Pharm GKB GenePA162377813
Clinical trialC11orf86
Miscellaneous
canSAR (ICR)C11orf86 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf86
EVEXC11orf86
GoPubMedC11orf86
iHOPC11orf86
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:13 CEST 2017

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