Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf87 (chromosome 11 open reading frame 87)

Identity

Alias_symbol (synonym)LOH11CR1A
LOC399947
NEURIM1
Other alias
HGNC (Hugo) C11orf87
LocusID (NCBI) 399947
Atlas_Id 60901
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 109422120 and ends at 109429167 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf87   33788
Cards
Entrez_Gene (NCBI)C11orf87  399947  chromosome 11 open reading frame 87
AliasesLOH11CR1A; NEURIM1
GeneCards (Weizmann)C11orf87
Ensembl hg19 (Hinxton)ENSG00000185742 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185742 [Gene_View]  chr11:109422120-109429167 [Contig_View]  C11orf87 [Vega]
ICGC DataPortalENSG00000185742
TCGA cBioPortalC11orf87
AceView (NCBI)C11orf87
Genatlas (Paris)C11orf87
WikiGenes399947
SOURCE (Princeton)C11orf87
Genetics Home Reference (NIH)C11orf87
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf87  -     chr11:109422120-109429167 +  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf87  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblC11orf87 - 11q22.3 [CytoView hg19]  C11orf87 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBIC11orf87 [Mapview hg19]  C11orf87 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096240 AK091086 AK303693 BC035798 BC068577
RefSeq transcript (Entrez)NM_207645
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf87
Cluster EST : UnigeneHs.172982 [ NCBI ]
CGAP (NCI)Hs.172982
Alternative Splicing GalleryENSG00000185742
Gene ExpressionC11orf87 [ NCBI-GEO ]   C11orf87 [ EBI - ARRAY_EXPRESS ]   C11orf87 [ SEEK ]   C11orf87 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf87 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399947
GTEX Portal (Tissue expression)C11orf87
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUJ2
Splice isoforms : SwissVarQ6NUJ2
PhosPhoSitePlusQ6NUJ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf87
DMDM Disease mutations399947
Blocks (Seattle)C11orf87
SuperfamilyQ6NUJ2
Human Protein AtlasENSG00000185742
Peptide AtlasQ6NUJ2
HPRD14218
IPIIPI00217781   IPI00983149   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUJ2
IntAct (EBI)Q6NUJ2
FunCoupENSG00000185742
BioGRIDC11orf87
STRING (EMBL)C11orf87
ZODIACC11orf87
Ontologies - Pathways
QuickGOQ6NUJ2
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkC11orf87
Atlas of Cancer Signalling NetworkC11orf87
Wikipedia pathwaysC11orf87
Orthology - Evolution
OrthoDB399947
GeneTree (enSembl)ENSG00000185742
Phylogenetic Trees/Animal Genes : TreeFamC11orf87
HOVERGENQ6NUJ2
HOGENOMQ6NUJ2
Homologs : HomoloGeneC11orf87
Homology/Alignments : Family Browser (UCSC)C11orf87
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf87 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf87
dbVarC11orf87
ClinVarC11orf87
1000_GenomesC11orf87 
Exome Variant ServerC11orf87
ExAC (Exome Aggregation Consortium)C11orf87 (select the gene name)
Genetic variants : HAPMAP399947
Genomic Variants (DGV)C11orf87 [DGVbeta]
DECIPHERC11orf87 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf87 
Mutations
ICGC Data PortalC11orf87 
TCGA Data PortalC11orf87 
Broad Tumor PortalC11orf87
OASIS PortalC11orf87 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf87  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf87
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf87
DgiDB (Drug Gene Interaction Database)C11orf87
DoCM (Curated mutations)C11orf87 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf87 (select a term)
intoGenC11orf87
Cancer3DC11orf87(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf87
Genetic Testing Registry C11orf87
NextProtQ6NUJ2 [Medical]
TSGene399947
GENETestsC11orf87
Target ValidationC11orf87
Huge Navigator C11orf87 [HugePedia]
snp3D : Map Gene to Disease399947
BioCentury BCIQC11orf87
ClinGenC11orf87
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399947
Chemical/Pharm GKB GenePA162377822
Clinical trialC11orf87
Miscellaneous
canSAR (ICR)C11orf87 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf87
EVEXC11orf87
GoPubMedC11orf87
iHOPC11orf87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:14 CEST 2017

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