Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C11orf88 (chromosome 11 open reading frame 88)

Identity

Alias_symbol (synonym)FLJ46266
Other alias-
HGNC (Hugo) C11orf88
LocusID (NCBI) 399949
Atlas_Id 60902
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111385510 and ends at 111407756 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf88   25061
Cards
Entrez_Gene (NCBI)C11orf88  399949  chromosome 11 open reading frame 88
Aliases
GeneCards (Weizmann)C11orf88
Ensembl hg19 (Hinxton)ENSG00000183644 [Gene_View]  chr11:111385510-111407756 [Contig_View]  C11orf88 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183644 [Gene_View]  chr11:111385510-111407756 [Contig_View]  C11orf88 [Vega]
ICGC DataPortalENSG00000183644
TCGA cBioPortalC11orf88
AceView (NCBI)C11orf88
Genatlas (Paris)C11orf88
WikiGenes399949
SOURCE (Princeton)C11orf88
Genetics Home Reference (NIH)C11orf88
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf88  -     chr11:111385510-111407756 +  11q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf88  -     11q23.1   [Description]    (hg38-Dec_2013)
EnsemblC11orf88 - 11q23.1 [CytoView hg19]  C11orf88 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf88 [Mapview hg19]  C11orf88 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI829856 AK128145 BC039505
RefSeq transcript (Entrez)NM_001100388 NM_207430
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)C11orf88
Cluster EST : UnigeneHs.411600 [ NCBI ]
CGAP (NCI)Hs.411600
Alternative Splicing GalleryENSG00000183644
Gene ExpressionC11orf88 [ NCBI-GEO ]   C11orf88 [ EBI - ARRAY_EXPRESS ]   C11orf88 [ SEEK ]   C11orf88 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf88 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399949
GTEX Portal (Tissue expression)C11orf88
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI97
Splice isoforms : SwissVarQ6PI97
PhosPhoSitePlusQ6PI97
Domains : Interpro (EBI)C11orf88   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf88
DMDM Disease mutations399949
Blocks (Seattle)C11orf88
SuperfamilyQ6PI97
Human Protein AtlasENSG00000183644
Peptide AtlasQ6PI97
HPRD13529
IPIIPI00448607   IPI00981570   IPI00413662   IPI00979811   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI97
IntAct (EBI)Q6PI97
FunCoupENSG00000183644
BioGRIDC11orf88
STRING (EMBL)C11orf88
ZODIACC11orf88
Ontologies - Pathways
QuickGOQ6PI97
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf88
Atlas of Cancer Signalling NetworkC11orf88
Wikipedia pathwaysC11orf88
Orthology - Evolution
OrthoDB399949
GeneTree (enSembl)ENSG00000183644
Phylogenetic Trees/Animal Genes : TreeFamC11orf88
HOVERGENQ6PI97
HOGENOMQ6PI97
Homologs : HomoloGeneC11orf88
Homology/Alignments : Family Browser (UCSC)C11orf88
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf88 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf88
dbVarC11orf88
ClinVarC11orf88
1000_GenomesC11orf88 
Exome Variant ServerC11orf88
ExAC (Exome Aggregation Consortium)C11orf88 (select the gene name)
Genetic variants : HAPMAP399949
Genomic Variants (DGV)C11orf88 [DGVbeta]
DECIPHER (Syndromes)11:111385510-111407756  ENSG00000183644
CONAN: Copy Number AnalysisC11orf88 
Mutations
ICGC Data PortalC11orf88 
TCGA Data PortalC11orf88 
Broad Tumor PortalC11orf88
OASIS PortalC11orf88 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf88  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf88
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf88
DgiDB (Drug Gene Interaction Database)C11orf88
DoCM (Curated mutations)C11orf88 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf88 (select a term)
intoGenC11orf88
Cancer3DC11orf88(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf88
Genetic Testing Registry C11orf88
NextProtQ6PI97 [Medical]
TSGene399949
GENETestsC11orf88
Huge Navigator C11orf88 [HugePedia]
snp3D : Map Gene to Disease399949
BioCentury BCIQC11orf88
ClinGenC11orf88
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399949
Chemical/Pharm GKB GenePA162377831
Clinical trialC11orf88
Miscellaneous
canSAR (ICR)C11orf88 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf88
EVEXC11orf88
GoPubMedC11orf88
iHOPC11orf88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:22 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.