Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf94 (chromosome 11 open reading frame 94)

Identity

Other alias-
HGNC (Hugo) C11orf94
LocusID (NCBI) 143678
Atlas_Id 60904
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 45906535 and ends at 45907282 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf94   37213
Cards
Entrez_Gene (NCBI)C11orf94  143678  chromosome 11 open reading frame 94
Aliases
GeneCards (Weizmann)C11orf94
Ensembl hg19 (Hinxton)ENSG00000234776 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234776 [Gene_View]  chr11:45906535-45907282 [Contig_View]  C11orf94 [Vega]
ICGC DataPortalENSG00000234776
TCGA cBioPortalC11orf94
AceView (NCBI)C11orf94
Genatlas (Paris)C11orf94
WikiGenes143678
SOURCE (Princeton)C11orf94
Genetics Home Reference (NIH)C11orf94
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf94  -     chr11:45906535-45907282 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf94  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf94 - 11p11.2 [CytoView hg19]  C11orf94 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf94 [Mapview hg19]  C11orf94 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf94
Cluster EST : UnigeneHs.193741 [ NCBI ]
CGAP (NCI)Hs.193741
Alternative Splicing GalleryENSG00000234776
Gene ExpressionC11orf94 [ NCBI-GEO ]   C11orf94 [ EBI - ARRAY_EXPRESS ]   C11orf94 [ SEEK ]   C11orf94 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf94 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143678
GTEX Portal (Tissue expression)C11orf94
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JXX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JXX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JXX5
Splice isoforms : SwissVarC9JXX5
PhosPhoSitePlusC9JXX5
Domains : Interpro (EBI)DUF4733   
Domain families : Pfam (Sanger)DUF4733 (PF15878)   
Domain families : Pfam (NCBI)pfam15878   
Conserved Domain (NCBI)C11orf94
DMDM Disease mutations143678
Blocks (Seattle)C11orf94
SuperfamilyC9JXX5
Human Protein AtlasENSG00000234776
Peptide AtlasC9JXX5
IPIIPI00827492   
Protein Interaction databases
DIP (DOE-UCLA)C9JXX5
IntAct (EBI)C9JXX5
FunCoupENSG00000234776
BioGRIDC11orf94
STRING (EMBL)C11orf94
ZODIACC11orf94
Ontologies - Pathways
QuickGOC9JXX5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC11orf94
Atlas of Cancer Signalling NetworkC11orf94
Wikipedia pathwaysC11orf94
Orthology - Evolution
OrthoDB143678
GeneTree (enSembl)ENSG00000234776
Phylogenetic Trees/Animal Genes : TreeFamC11orf94
HOVERGENC9JXX5
HOGENOMC9JXX5
Homologs : HomoloGeneC11orf94
Homology/Alignments : Family Browser (UCSC)C11orf94
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf94 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf94
dbVarC11orf94
ClinVarC11orf94
1000_GenomesC11orf94 
Exome Variant ServerC11orf94
ExAC (Exome Aggregation Consortium)C11orf94 (select the gene name)
Genetic variants : HAPMAP143678
Genomic Variants (DGV)C11orf94 [DGVbeta]
DECIPHERC11orf94 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf94 
Mutations
ICGC Data PortalC11orf94 
TCGA Data PortalC11orf94 
Broad Tumor PortalC11orf94
OASIS PortalC11orf94 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf94  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf94
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf94
DgiDB (Drug Gene Interaction Database)C11orf94
DoCM (Curated mutations)C11orf94 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf94 (select a term)
intoGenC11orf94
Cancer3DC11orf94(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf94
Genetic Testing Registry C11orf94
NextProtC9JXX5 [Medical]
TSGene143678
GENETestsC11orf94
Target ValidationC11orf94
Huge Navigator C11orf94 [HugePedia]
snp3D : Map Gene to Disease143678
BioCentury BCIQC11orf94
ClinGenC11orf94
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143678
Chemical/Pharm GKB GenePA165543255
Clinical trialC11orf94
Miscellaneous
canSAR (ICR)C11orf94 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf94
EVEXC11orf94
GoPubMedC11orf94
iHOPC11orf94
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:15 CEST 2017

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