Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C11orf95 (chromosome 11 open reading frame 95)

Identity

Alias_symbol (synonym)MGC3032
Other alias-
HGNC (Hugo) C11orf95
LocusID (NCBI) 65998
Atlas_Id 53777
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63759892 and ends at 63768641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf95 (11q13.1) / MAML2 (11q21)C11orf95 (11q13.1) / MKL2 (16p13.12)C11orf95 (11q13.1) / RELA (11q13.1)
C11orf95 (11q13.1) / YAP1 (11q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Soft Tissues: Lipoma: Chondroid lipoma
Soft tissue tumors: an overview

External links

Nomenclature
HGNC (Hugo)C11orf95   28449
Cards
Entrez_Gene (NCBI)C11orf95  65998  chromosome 11 open reading frame 95
Aliases
GeneCards (Weizmann)C11orf95
Ensembl hg19 (Hinxton)ENSG00000188070 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188070 [Gene_View]  chr11:63759892-63768641 [Contig_View]  C11orf95 [Vega]
ICGC DataPortalENSG00000188070
TCGA cBioPortalC11orf95
AceView (NCBI)C11orf95
Genatlas (Paris)C11orf95
WikiGenes65998
SOURCE (Princeton)C11orf95
Genetics Home Reference (NIH)C11orf95
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf95  -     chr11:63759892-63768641 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf95  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblC11orf95 - 11q13.1 [CytoView hg19]  C11orf95 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf95 [Mapview hg19]  C11orf95 [Mapview hg38]
OMIM615699   
Gene and transcription
Genbank (Entrez)AB231750 AB231751 AB231752 AK096306 BC000572
RefSeq transcript (Entrez)NM_001144936
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf95
Cluster EST : UnigeneHs.191073 [ NCBI ]
CGAP (NCI)Hs.191073
Alternative Splicing GalleryENSG00000188070
Gene ExpressionC11orf95 [ NCBI-GEO ]   C11orf95 [ EBI - ARRAY_EXPRESS ]   C11orf95 [ SEEK ]   C11orf95 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf95 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65998
GTEX Portal (Tissue expression)C11orf95
Human Protein AtlasENSG00000188070-C11orf95 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JLR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JLR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JLR9
Splice isoforms : SwissVarC9JLR9
PhosPhoSitePlusC9JLR9
Domains : Interpro (EBI)Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)C11orf95
DMDM Disease mutations65998
Blocks (Seattle)C11orf95
SuperfamilyC9JLR9
Human Protein Atlas [tissue]ENSG00000188070-C11orf95 [tissue]
Peptide AtlasC9JLR9
IPIIPI00942623   
Protein Interaction databases
DIP (DOE-UCLA)C9JLR9
IntAct (EBI)C9JLR9
FunCoupENSG00000188070
BioGRIDC11orf95
STRING (EMBL)C11orf95
ZODIACC11orf95
Ontologies - Pathways
QuickGOC9JLR9
Ontology : AmiGOnucleic acid binding  
Ontology : EGO-EBInucleic acid binding  
NDEx NetworkC11orf95
Atlas of Cancer Signalling NetworkC11orf95
Wikipedia pathwaysC11orf95
Orthology - Evolution
OrthoDB65998
GeneTree (enSembl)ENSG00000188070
Phylogenetic Trees/Animal Genes : TreeFamC11orf95
HOVERGENC9JLR9
HOGENOMC9JLR9
Homologs : HomoloGeneC11orf95
Homology/Alignments : Family Browser (UCSC)C11orf95
Gene fusions - Rearrangements
Fusion : MitelmanC11orf95/MAML2 [11q13.1/11q21]  
Fusion : MitelmanC11orf95/MKL2 [11q13.1/16p13.12]  [t(11;16)(q13;p13)]  
Fusion : MitelmanC11orf95/RELA [11q13.1/11q13.1]  [t(11;11)(q13;q13)]  
Fusion : MitelmanC11orf95/YAP1 [11q13.1/11q22.1]  [t(11;11)(q13;q22)]  
Fusion : QuiverC11orf95
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf95 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf95
dbVarC11orf95
ClinVarC11orf95
1000_GenomesC11orf95 
Exome Variant ServerC11orf95
ExAC (Exome Aggregation Consortium)ENSG00000188070
GNOMAD BrowserENSG00000188070
Genetic variants : HAPMAP65998
Genomic Variants (DGV)C11orf95 [DGVbeta]
DECIPHERC11orf95 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf95 
Mutations
ICGC Data PortalC11orf95 
TCGA Data PortalC11orf95 
Broad Tumor PortalC11orf95
OASIS PortalC11orf95 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC11orf95
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf95
DgiDB (Drug Gene Interaction Database)C11orf95
DoCM (Curated mutations)C11orf95 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf95 (select a term)
intoGenC11orf95
Cancer3DC11orf95(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615699   
Orphanet
DisGeNETC11orf95
MedgenC11orf95
Genetic Testing Registry C11orf95
NextProtC9JLR9 [Medical]
TSGene65998
GENETestsC11orf95
Target ValidationC11orf95
Huge Navigator C11orf95 [HugePedia]
snp3D : Map Gene to Disease65998
BioCentury BCIQC11orf95
ClinGenC11orf95
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65998
Chemical/Pharm GKB GenePA165543266
Clinical trialC11orf95
Miscellaneous
canSAR (ICR)C11orf95 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf95
EVEXC11orf95
GoPubMedC11orf95
iHOPC11orf95
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 28 13:03:35 CET 2018
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