Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf96 (chromosome 11 open reading frame 96)

Identity

Alias_symbol (synonym)AG2
Other alias
HGNC (Hugo) C11orf96
LocusID (NCBI) 387763
Atlas_Id 60905
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 43942556 and ends at 43943883 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C11orf96 (11p11.2) / CRLF3 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf96   38675
Cards
Entrez_Gene (NCBI)C11orf96  387763  chromosome 11 open reading frame 96
AliasesAG2
GeneCards (Weizmann)C11orf96
Ensembl hg19 (Hinxton)ENSG00000187479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187479 [Gene_View]  chr11:43942556-43943883 [Contig_View]  C11orf96 [Vega]
ICGC DataPortalENSG00000187479
TCGA cBioPortalC11orf96
AceView (NCBI)C11orf96
Genatlas (Paris)C11orf96
WikiGenes387763
SOURCE (Princeton)C11orf96
Genetics Home Reference (NIH)C11orf96
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf96  -     chr11:43942556-43943883 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf96  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf96 - 11p11.2 [CytoView hg19]  C11orf96 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf96 [Mapview hg19]  C11orf96 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC052560
RefSeq transcript (Entrez)NM_001145033
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf96
Cluster EST : UnigeneHs.530443 [ NCBI ]
CGAP (NCI)Hs.530443
Alternative Splicing GalleryENSG00000187479
Gene ExpressionC11orf96 [ NCBI-GEO ]   C11orf96 [ EBI - ARRAY_EXPRESS ]   C11orf96 [ SEEK ]   C11orf96 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf96 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387763
GTEX Portal (Tissue expression)C11orf96
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7L8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7L8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7L8
Splice isoforms : SwissVarQ7Z7L8
PhosPhoSitePlusQ7Z7L8
Domains : Interpro (EBI)DUF4695   
Domain families : Pfam (Sanger)DUF4695 (PF15766)   
Domain families : Pfam (NCBI)pfam15766   
Conserved Domain (NCBI)C11orf96
DMDM Disease mutations387763
Blocks (Seattle)C11orf96
SuperfamilyQ7Z7L8
Human Protein AtlasENSG00000187479
Peptide AtlasQ7Z7L8
IPIIPI00398347   IPI00979229   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7L8
IntAct (EBI)Q7Z7L8
FunCoupENSG00000187479
BioGRIDC11orf96
STRING (EMBL)C11orf96
ZODIACC11orf96
Ontologies - Pathways
QuickGOQ7Z7L8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf96
Atlas of Cancer Signalling NetworkC11orf96
Wikipedia pathwaysC11orf96
Orthology - Evolution
OrthoDB387763
GeneTree (enSembl)ENSG00000187479
Phylogenetic Trees/Animal Genes : TreeFamC11orf96
HOVERGENQ7Z7L8
HOGENOMQ7Z7L8
Homologs : HomoloGeneC11orf96
Homology/Alignments : Family Browser (UCSC)C11orf96
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf96 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf96
dbVarC11orf96
ClinVarC11orf96
1000_GenomesC11orf96 
Exome Variant ServerC11orf96
ExAC (Exome Aggregation Consortium)C11orf96 (select the gene name)
Genetic variants : HAPMAP387763
Genomic Variants (DGV)C11orf96 [DGVbeta]
DECIPHERC11orf96 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf96 
Mutations
ICGC Data PortalC11orf96 
TCGA Data PortalC11orf96 
Broad Tumor PortalC11orf96
OASIS PortalC11orf96 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf96  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf96
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf96
DgiDB (Drug Gene Interaction Database)C11orf96
DoCM (Curated mutations)C11orf96 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf96 (select a term)
intoGenC11orf96
Cancer3DC11orf96(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf96
Genetic Testing Registry C11orf96
NextProtQ7Z7L8 [Medical]
TSGene387763
GENETestsC11orf96
Target ValidationC11orf96
Huge Navigator C11orf96 [HugePedia]
snp3D : Map Gene to Disease387763
BioCentury BCIQC11orf96
ClinGenC11orf96
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387763
Chemical/Pharm GKB GenePA165543281
Clinical trialC11orf96
Miscellaneous
canSAR (ICR)C11orf96 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf96
EVEXC11orf96
GoPubMedC11orf96
iHOPC11orf96
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:41 CEST 2017

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