Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf98 (chromosome 11 open reading frame 98)

Identity

Alias_namesC11orf48
Other alias
HGNC (Hugo) C11orf98
LocusID (NCBI) 102288414
Atlas_Id 60907
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62662817 and ends at 62665216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C11orf98 (11q12.3) / C11orf98 (11q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf98   51238
Cards
Entrez_Gene (NCBI)C11orf98  102288414  chromosome 11 open reading frame 98
AliasesC11orf48
GeneCards (Weizmann)C11orf98
Ensembl hg19 (Hinxton)ENSG00000278615 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278615 [Gene_View]  chr11:62662817-62665216 [Contig_View]  C11orf98 [Vega]
ICGC DataPortalENSG00000278615
TCGA cBioPortalC11orf98
AceView (NCBI)C11orf98
Genatlas (Paris)C11orf98
WikiGenes102288414
SOURCE (Princeton)C11orf98
Genetics Home Reference (NIH)C11orf98
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf98  -     chr11:62662817-62665216 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf98  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblC11orf98 - 11q12.3 [CytoView hg19]  C11orf98 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBIC11orf98 [Mapview hg19]  C11orf98 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF207356 BG563566 BG681685 BQ231052 BX107288
RefSeq transcript (Entrez)NM_001286086
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf98
Cluster EST : UnigeneHs.9061 [ NCBI ]
CGAP (NCI)Hs.9061
Alternative Splicing GalleryENSG00000278615
Gene ExpressionC11orf98 [ NCBI-GEO ]   C11orf98 [ EBI - ARRAY_EXPRESS ]   C11orf98 [ SEEK ]   C11orf98 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf98 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102288414
GTEX Portal (Tissue expression)C11orf98
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PRG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PRG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PRG8
Splice isoforms : SwissVarE9PRG8
PhosPhoSitePlusE9PRG8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf98
DMDM Disease mutations102288414
Blocks (Seattle)C11orf98
SuperfamilyE9PRG8
Human Protein AtlasENSG00000278615
Peptide AtlasE9PRG8
Protein Interaction databases
DIP (DOE-UCLA)E9PRG8
IntAct (EBI)E9PRG8
FunCoupENSG00000278615
BioGRIDC11orf98
STRING (EMBL)C11orf98
ZODIACC11orf98
Ontologies - Pathways
QuickGOE9PRG8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf98
Atlas of Cancer Signalling NetworkC11orf98
Wikipedia pathwaysC11orf98
Orthology - Evolution
OrthoDB102288414
GeneTree (enSembl)ENSG00000278615
Phylogenetic Trees/Animal Genes : TreeFamC11orf98
HOVERGENE9PRG8
HOGENOME9PRG8
Homologs : HomoloGeneC11orf98
Homology/Alignments : Family Browser (UCSC)C11orf98
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf98 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf98
dbVarC11orf98
ClinVarC11orf98
1000_GenomesC11orf98 
Exome Variant ServerC11orf98
ExAC (Exome Aggregation Consortium)C11orf98 (select the gene name)
Genetic variants : HAPMAP102288414
Genomic Variants (DGV)C11orf98 [DGVbeta]
DECIPHERC11orf98 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf98 
Mutations
ICGC Data PortalC11orf98 
TCGA Data PortalC11orf98 
Broad Tumor PortalC11orf98
OASIS PortalC11orf98 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC11orf98
BioMutasearch C11orf98
DgiDB (Drug Gene Interaction Database)C11orf98
DoCM (Curated mutations)C11orf98 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf98 (select a term)
intoGenC11orf98
Cancer3DC11orf98(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf98
Genetic Testing Registry C11orf98
NextProtE9PRG8 [Medical]
TSGene102288414
GENETestsC11orf98
Target ValidationC11orf98
Huge Navigator C11orf98 [HugePedia]
snp3D : Map Gene to Disease102288414
BioCentury BCIQC11orf98
ClinGenC11orf98
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102288414
Chemical/Pharm GKB GenePA166123671
Clinical trialC11orf98
Miscellaneous
canSAR (ICR)C11orf98 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf98
EVEXC11orf98
GoPubMedC11orf98
iHOPC11orf98
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:41 CEST 2017

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