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C12orf10 (chromosome 12 open reading frame 10)

Identity

Alias_symbol (synonym)MYG
MYG1
Gamm1
Other aliasMST024
MSTP024
HGNC (Hugo) C12orf10
LocusID (NCBI) 60314
Atlas_Id 60908
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53693470 and ends at 53700965 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C12orf10 (12q13.13) / C12orf10 (12q13.13)CTDSP2 (12q14.1) / C12orf10 (12q13.13)SREBF1 (17p11.2) / C12orf10 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf10   17590
Cards
Entrez_Gene (NCBI)C12orf10  60314  chromosome 12 open reading frame 10
AliasesGamm1; MST024; MSTP024; MYG; 
MYG1
GeneCards (Weizmann)C12orf10
Ensembl hg19 (Hinxton)ENSG00000139637 [Gene_View]  chr12:53693470-53700965 [Contig_View]  C12orf10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139637 [Gene_View]  chr12:53693470-53700965 [Contig_View]  C12orf10 [Vega]
ICGC DataPortalENSG00000139637
TCGA cBioPortalC12orf10
AceView (NCBI)C12orf10
Genatlas (Paris)C12orf10
WikiGenes60314
SOURCE (Princeton)C12orf10
Genetics Home Reference (NIH)C12orf10
Genomic and cartography
GoldenPath hg19 (UCSC)C12orf10  -     chr12:53693470-53700965 +  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C12orf10  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblC12orf10 - 12q13.13 [CytoView hg19]  C12orf10 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIC12orf10 [Mapview hg19]  C12orf10 [Mapview hg38]
OMIM611366   
Gene and transcription
Genbank (Entrez)AA972697 AF111805 AF289485 AK293449 BC013956
RefSeq transcript (Entrez)NM_021640
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)C12orf10
Cluster EST : UnigeneHs.655988 [ NCBI ]
CGAP (NCI)Hs.655988
Alternative Splicing GalleryENSG00000139637
Gene ExpressionC12orf10 [ NCBI-GEO ]   C12orf10 [ EBI - ARRAY_EXPRESS ]   C12orf10 [ SEEK ]   C12orf10 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60314
GTEX Portal (Tissue expression)C12orf10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HB07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HB07
Splice isoforms : SwissVarQ9HB07
PhosPhoSitePlusQ9HB07
Domains : Interpro (EBI)Met-dep_prot_hydro   
Domain families : Pfam (Sanger)UPF0160 (PF03690)   
Domain families : Pfam (NCBI)pfam03690   
Conserved Domain (NCBI)C12orf10
DMDM Disease mutations60314
Blocks (Seattle)C12orf10
SuperfamilyQ9HB07
Human Protein AtlasENSG00000139637
Peptide AtlasQ9HB07
HPRD10705
IPIIPI00029444   IPI00304163   IPI01021558   IPI01021704   IPI01021265   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB07
IntAct (EBI)Q9HB07
FunCoupENSG00000139637
BioGRIDC12orf10
STRING (EMBL)C12orf10
ZODIACC12orf10
Ontologies - Pathways
QuickGOQ9HB07
Ontology : AmiGOmolecular_function  nucleus  nucleoplasm  mitochondrion  locomotory exploration behavior  pigmentation  extracellular exosome  
Ontology : EGO-EBImolecular_function  nucleus  nucleoplasm  mitochondrion  locomotory exploration behavior  pigmentation  extracellular exosome  
NDEx NetworkC12orf10
Atlas of Cancer Signalling NetworkC12orf10
Wikipedia pathwaysC12orf10
Orthology - Evolution
OrthoDB60314
GeneTree (enSembl)ENSG00000139637
Phylogenetic Trees/Animal Genes : TreeFamC12orf10
HOVERGENQ9HB07
HOGENOMQ9HB07
Homologs : HomoloGeneC12orf10
Homology/Alignments : Family Browser (UCSC)C12orf10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf10
dbVarC12orf10
ClinVarC12orf10
1000_GenomesC12orf10 
Exome Variant ServerC12orf10
ExAC (Exome Aggregation Consortium)C12orf10 (select the gene name)
Genetic variants : HAPMAP60314
Genomic Variants (DGV)C12orf10 [DGVbeta]
DECIPHER (Syndromes)12:53693470-53700965  ENSG00000139637
CONAN: Copy Number AnalysisC12orf10 
Mutations
ICGC Data PortalC12orf10 
TCGA Data PortalC12orf10 
Broad Tumor PortalC12orf10
OASIS PortalC12orf10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf10
DgiDB (Drug Gene Interaction Database)C12orf10
DoCM (Curated mutations)C12orf10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf10 (select a term)
intoGenC12orf10
Cancer3DC12orf10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611366   
Orphanet
MedgenC12orf10
Genetic Testing Registry C12orf10
NextProtQ9HB07 [Medical]
TSGene60314
GENETestsC12orf10
Huge Navigator C12orf10 [HugePedia]
snp3D : Map Gene to Disease60314
BioCentury BCIQC12orf10
ClinGenC12orf10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60314
Chemical/Pharm GKB GenePA25501
Clinical trialC12orf10
Miscellaneous
canSAR (ICR)C12orf10 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf10
EVEXC12orf10
GoPubMedC12orf10
iHOPC12orf10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:24 CET 2017

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