Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C12orf29 (chromosome 12 open reading frame 29)

Identity

Alias (NCBI)-
HGNC (Hugo) C12orf29
HGNC Alias symbDKFZp434N2030
LocusID (NCBI) 91298
Atlas_Id 60909
Location 12q21.32  [Link to chromosome band 12q21]
Location_base_pair Starts at 88035491 and ends at 88050160 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C12orf29 (12q21.32) / CDH8 (16q21)C12orf29 (12q21.32) / IRAK4 (12q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;12)(q12;q21) C12orf29/IRAK4

External links

Nomenclature
HGNC (Hugo)C12orf29   25322
Cards
Entrez_Gene (NCBI)C12orf29    chromosome 12 open reading frame 29
Aliases
GeneCards (Weizmann)C12orf29
Ensembl hg19 (Hinxton)ENSG00000133641 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133641 [Gene_View]  ENSG00000133641 [Sequence]  chr12:88035491-88050160 [Contig_View]  C12orf29 [Vega]
ICGC DataPortalENSG00000133641
TCGA cBioPortalC12orf29
AceView (NCBI)C12orf29
Genatlas (Paris)C12orf29
SOURCE (Princeton)C12orf29
Genetics Home Reference (NIH)C12orf29
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf29  -     chr12:88035491-88050160 +  12q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf29  -     12q21.32   [Description]    (hg19-Feb_2009)
GoldenPathC12orf29 - 12q21.32 [CytoView hg19]  C12orf29 - 12q21.32 [CytoView hg38]
ImmunoBaseENSG00000133641
genome Data Viewer NCBIC12orf29 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK095477 AK311153 AK311222 AL049382 AL137488
RefSeq transcript (Entrez)NM_001009894
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf29
Alternative Splicing GalleryENSG00000133641
Gene ExpressionC12orf29 [ NCBI-GEO ]   C12orf29 [ EBI - ARRAY_EXPRESS ]   C12orf29 [ SEEK ]   C12orf29 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf29 [ Firebrowse - Broad ]
GenevisibleExpression of C12orf29 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91298
GTEX Portal (Tissue expression)C12orf29
Human Protein AtlasENSG00000133641-C12orf29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N999   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N999  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N999
Splice isoforms : SwissVarQ8N999
PhosPhoSitePlusQ8N999
Domains : Interpro (EBI)DUF5565   
Domain families : Pfam (Sanger)DUF5565 (PF17720)   
Domain families : Pfam (NCBI)pfam17720   
Conserved Domain (NCBI)C12orf29
Blocks (Seattle)C12orf29
SuperfamilyQ8N999
Human Protein Atlas [tissue]ENSG00000133641-C12orf29 [tissue]
Peptide AtlasQ8N999
HPRD13199
IPIIPI00795287   IPI00465111   IPI00550410   IPI01022775   
Protein Interaction databases
DIP (DOE-UCLA)Q8N999
IntAct (EBI)Q8N999
BioGRIDC12orf29
STRING (EMBL)C12orf29
ZODIACC12orf29
Ontologies - Pathways
QuickGOQ8N999
Ontology : AmiGOhematopoietic progenitor cell differentiation  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  
NDEx NetworkC12orf29
Atlas of Cancer Signalling NetworkC12orf29
Wikipedia pathwaysC12orf29
Orthology - Evolution
OrthoDB91298
GeneTree (enSembl)ENSG00000133641
Phylogenetic Trees/Animal Genes : TreeFamC12orf29
HOGENOMQ8N999
Homologs : HomoloGeneC12orf29
Homology/Alignments : Family Browser (UCSC)C12orf29
Gene fusions - Rearrangements
Fusion : QuiverC12orf29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf29 [hg38]
dbVarC12orf29
ClinVarC12orf29
MonarchC12orf29
1000_GenomesC12orf29 
Exome Variant ServerC12orf29
GNOMAD BrowserENSG00000133641
Varsome BrowserC12orf29
Genomic Variants (DGV)C12orf29 [DGVbeta]
DECIPHERC12orf29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf29 
Mutations
ICGC Data PortalC12orf29 
TCGA Data PortalC12orf29 
Broad Tumor PortalC12orf29
OASIS PortalC12orf29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf29  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC12orf29
Mutations and Diseases : HGMDC12orf29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf29
DgiDB (Drug Gene Interaction Database)C12orf29
DoCM (Curated mutations)C12orf29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf29 (select a term)
intoGenC12orf29
Cancer3DC12orf29(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC12orf29
MedgenC12orf29
Genetic Testing Registry C12orf29
NextProtQ8N999 [Medical]
GENETestsC12orf29
Target ValidationC12orf29
Huge Navigator C12orf29 [HugePedia]
ClinGenC12orf29
Clinical trials, drugs, therapy
MyCancerGenomeC12orf29
Protein Interactions : CTD
Pharm GKB GenePA143485359
Clinical trialC12orf29
Miscellaneous
canSAR (ICR)C12orf29 (select the gene name)
HarmonizomeC12orf29
DataMed IndexC12orf29
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf29
EVEXC12orf29
GoPubMedC12orf29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:47:30 CET 2020
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