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C12orf42 (chromosome 12 open reading frame 42)

Identity

Alias_symbol (synonym)FLJ25323
Other alias-
HGNC (Hugo) C12orf42
LocusID (NCBI) 374470
Atlas_Id 52074
Location 12q23.2  [Link to chromosome band 12q23]
Location_base_pair Starts at 103301941 and ends at 103496010 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CORO1C (12q24.11) / C12orf42 (12q23.2)TM7SF3 (12p11.23) / C12orf42 (12q23.2)CORO1C 12q24.11 / C12orf42 12q23.2
TM7SF3 12p11.23 / C12orf42 12q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf42   24729
Cards
Entrez_Gene (NCBI)C12orf42  374470  chromosome 12 open reading frame 42
Aliases
GeneCards (Weizmann)C12orf42
Ensembl hg19 (Hinxton)ENSG00000179088 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179088 [Gene_View]  chr12:103301941-103496010 [Contig_View]  C12orf42 [Vega]
ICGC DataPortalENSG00000179088
TCGA cBioPortalC12orf42
AceView (NCBI)C12orf42
Genatlas (Paris)C12orf42
WikiGenes374470
SOURCE (Princeton)C12orf42
Genetics Home Reference (NIH)C12orf42
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf42  -     chr12:103301941-103496010 -  12q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf42  -     12q23.2   [Description]    (hg19-Feb_2009)
EnsemblC12orf42 - 12q23.2 [CytoView hg19]  C12orf42 - 12q23.2 [CytoView hg38]
Mapping of homologs : NCBIC12orf42 [Mapview hg19]  C12orf42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA992269 AK058052 BC039352 BC044617 BC117392
RefSeq transcript (Entrez)NM_001099336 NM_001278419 NM_001278420 NM_198521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf42
Cluster EST : UnigeneHs.534649 [ NCBI ]
CGAP (NCI)Hs.534649
Alternative Splicing GalleryENSG00000179088
Gene ExpressionC12orf42 [ NCBI-GEO ]   C12orf42 [ EBI - ARRAY_EXPRESS ]   C12orf42 [ SEEK ]   C12orf42 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374470
GTEX Portal (Tissue expression)C12orf42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LP6
Splice isoforms : SwissVarQ96LP6
PhosPhoSitePlusQ96LP6
Domains : Interpro (EBI)DUF4607   
Domain families : Pfam (Sanger)DUF4607 (PF15380)   
Domain families : Pfam (NCBI)pfam15380   
Conserved Domain (NCBI)C12orf42
DMDM Disease mutations374470
Blocks (Seattle)C12orf42
SuperfamilyQ96LP6
Human Protein AtlasENSG00000179088
Peptide AtlasQ96LP6
HPRD13393
IPIIPI00294828   IPI00643739   IPI01022841   IPI00827698   IPI01022668   
Protein Interaction databases
DIP (DOE-UCLA)Q96LP6
IntAct (EBI)Q96LP6
FunCoupENSG00000179088
BioGRIDC12orf42
STRING (EMBL)C12orf42
ZODIACC12orf42
Ontologies - Pathways
QuickGOQ96LP6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf42
Atlas of Cancer Signalling NetworkC12orf42
Wikipedia pathwaysC12orf42
Orthology - Evolution
OrthoDB374470
GeneTree (enSembl)ENSG00000179088
Phylogenetic Trees/Animal Genes : TreeFamC12orf42
HOVERGENQ96LP6
HOGENOMQ96LP6
Homologs : HomoloGeneC12orf42
Homology/Alignments : Family Browser (UCSC)C12orf42
Gene fusions - Rearrangements
Fusion : MitelmanCORO1C/C12orf42 [12q24.11/12q23.2]  [t(12;12)(q23;q24)]  
Fusion : MitelmanTM7SF3/C12orf42 [12p11.23/12q23.2]  [t(12;12)(p11;q23)]  
Fusion: TCGACORO1C 12q24.11 C12orf42 12q23.2 BRCA
Fusion: TCGATM7SF3 12p11.23 C12orf42 12q23.2 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf42
dbVarC12orf42
ClinVarC12orf42
1000_GenomesC12orf42 
Exome Variant ServerC12orf42
ExAC (Exome Aggregation Consortium)C12orf42 (select the gene name)
Genetic variants : HAPMAP374470
Genomic Variants (DGV)C12orf42 [DGVbeta]
DECIPHERC12orf42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf42 
Mutations
ICGC Data PortalC12orf42 
TCGA Data PortalC12orf42 
Broad Tumor PortalC12orf42
OASIS PortalC12orf42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf42
DgiDB (Drug Gene Interaction Database)C12orf42
DoCM (Curated mutations)C12orf42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf42 (select a term)
intoGenC12orf42
Cancer3DC12orf42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf42
Genetic Testing Registry C12orf42
NextProtQ96LP6 [Medical]
TSGene374470
GENETestsC12orf42
Target ValidationC12orf42
Huge Navigator C12orf42 [HugePedia]
snp3D : Map Gene to Disease374470
BioCentury BCIQC12orf42
ClinGenC12orf42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374470
Chemical/Pharm GKB GenePA143485372
Clinical trialC12orf42
Miscellaneous
canSAR (ICR)C12orf42 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf42
EVEXC12orf42
GoPubMedC12orf42
iHOPC12orf42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:22 CEST 2017

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