Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C12orf43 (chromosome 12 open reading frame 43)

Identity

Alias_symbol (synonym)FLJ12448
Other alias-
HGNC (Hugo) C12orf43
LocusID (NCBI) 64897
Atlas_Id 60911
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 121002422 and ends at 121016502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf43   25719
Cards
Entrez_Gene (NCBI)C12orf43  64897  chromosome 12 open reading frame 43
Aliases
GeneCards (Weizmann)C12orf43
Ensembl hg19 (Hinxton)ENSG00000157895 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157895 [Gene_View]  chr12:121002422-121016502 [Contig_View]  C12orf43 [Vega]
ICGC DataPortalENSG00000157895
TCGA cBioPortalC12orf43
AceView (NCBI)C12orf43
Genatlas (Paris)C12orf43
WikiGenes64897
SOURCE (Princeton)C12orf43
Genetics Home Reference (NIH)C12orf43
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf43  -     chr12:121002422-121016502 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf43  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblC12orf43 - 12q24.31 [CytoView hg19]  C12orf43 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIC12orf43 [Mapview hg19]  C12orf43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022510 AK222630 AK225162 AK299170 AK301566
RefSeq transcript (Entrez)NM_001286191 NM_001286192 NM_001286195 NM_001286196 NM_001286197 NM_001286198 NM_022895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf43
Cluster EST : UnigeneHs.528671 [ NCBI ]
CGAP (NCI)Hs.528671
Alternative Splicing GalleryENSG00000157895
Gene ExpressionC12orf43 [ NCBI-GEO ]   C12orf43 [ EBI - ARRAY_EXPRESS ]   C12orf43 [ SEEK ]   C12orf43 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64897
GTEX Portal (Tissue expression)C12orf43
Human Protein AtlasENSG00000157895-C12orf43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C57
Splice isoforms : SwissVarQ96C57
PhosPhoSitePlusQ96C57
Domains : Interpro (EBI)UPF_C12orf43   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C12orf43
DMDM Disease mutations64897
Blocks (Seattle)C12orf43
SuperfamilyQ96C57
Human Protein Atlas [tissue]ENSG00000157895-C12orf43 [tissue]
Peptide AtlasQ96C57
HPRD07771
IPIIPI00795249   IPI00100930   IPI01015688   IPI01009335   IPI01015332   IPI01013004   IPI01013190   IPI01012062   
Protein Interaction databases
DIP (DOE-UCLA)Q96C57
IntAct (EBI)Q96C57
FunCoupENSG00000157895
BioGRIDC12orf43
STRING (EMBL)C12orf43
ZODIACC12orf43
Ontologies - Pathways
QuickGOQ96C57
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC12orf43
Atlas of Cancer Signalling NetworkC12orf43
Wikipedia pathwaysC12orf43
Orthology - Evolution
OrthoDB64897
GeneTree (enSembl)ENSG00000157895
Phylogenetic Trees/Animal Genes : TreeFamC12orf43
HOVERGENQ96C57
HOGENOMQ96C57
Homologs : HomoloGeneC12orf43
Homology/Alignments : Family Browser (UCSC)C12orf43
Gene fusions - Rearrangements
Tumor Fusion PortalC12orf43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf43
dbVarC12orf43
ClinVarC12orf43
1000_GenomesC12orf43 
Exome Variant ServerC12orf43
ExAC (Exome Aggregation Consortium)ENSG00000157895
GNOMAD BrowserENSG00000157895
Genetic variants : HAPMAP64897
Genomic Variants (DGV)C12orf43 [DGVbeta]
DECIPHERC12orf43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf43 
Mutations
ICGC Data PortalC12orf43 
TCGA Data PortalC12orf43 
Broad Tumor PortalC12orf43
OASIS PortalC12orf43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf43
DgiDB (Drug Gene Interaction Database)C12orf43
DoCM (Curated mutations)C12orf43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf43 (select a term)
intoGenC12orf43
Cancer3DC12orf43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC12orf43
MedgenC12orf43
Genetic Testing Registry C12orf43
NextProtQ96C57 [Medical]
TSGene64897
GENETestsC12orf43
Target ValidationC12orf43
Huge Navigator C12orf43 [HugePedia]
snp3D : Map Gene to Disease64897
BioCentury BCIQC12orf43
ClinGenC12orf43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64897
Chemical/Pharm GKB GenePA143485373
Clinical trialC12orf43
Miscellaneous
canSAR (ICR)C12orf43 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf43
EVEXC12orf43
GoPubMedC12orf43
iHOPC12orf43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:25:50 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.