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C12orf45 (chromosome 12 open reading frame 45)

Identity

Alias_symbol (synonym)MGC40397
Other alias-
HGNC (Hugo) C12orf45
LocusID (NCBI) 121053
Atlas_Id 60912
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 104986320 and ends at 104994727 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PIAS3 (1q21.1) / C12orf45 (12q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf45   28628
Cards
Entrez_Gene (NCBI)C12orf45  121053  chromosome 12 open reading frame 45
Aliases
GeneCards (Weizmann)C12orf45
Ensembl hg19 (Hinxton)ENSG00000151131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151131 [Gene_View]  chr12:104986320-104994727 [Contig_View]  C12orf45 [Vega]
ICGC DataPortalENSG00000151131
TCGA cBioPortalC12orf45
AceView (NCBI)C12orf45
Genatlas (Paris)C12orf45
WikiGenes121053
SOURCE (Princeton)C12orf45
Genetics Home Reference (NIH)C12orf45
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf45  -     chr12:104986320-104994727 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf45  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblC12orf45 - 12q23.3 [CytoView hg19]  C12orf45 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIC12orf45 [Mapview hg19]  C12orf45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032326 BG829346 DQ891649 DQ894838
RefSeq transcript (Entrez)NM_152318
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf45
Cluster EST : UnigeneHs.295563 [ NCBI ]
CGAP (NCI)Hs.295563
Alternative Splicing GalleryENSG00000151131
Gene ExpressionC12orf45 [ NCBI-GEO ]   C12orf45 [ EBI - ARRAY_EXPRESS ]   C12orf45 [ SEEK ]   C12orf45 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121053
GTEX Portal (Tissue expression)C12orf45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5I9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5I9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5I9
Splice isoforms : SwissVarQ8N5I9
PhosPhoSitePlusQ8N5I9
Domains : Interpro (EBI)DUF4598   
Domain families : Pfam (Sanger)DUF4598 (PF15370)   
Domain families : Pfam (NCBI)pfam15370   
Conserved Domain (NCBI)C12orf45
DMDM Disease mutations121053
Blocks (Seattle)C12orf45
SuperfamilyQ8N5I9
Human Protein AtlasENSG00000151131
Peptide AtlasQ8N5I9
HPRD17556
IPIIPI01022095   IPI00166861   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5I9
IntAct (EBI)Q8N5I9
FunCoupENSG00000151131
BioGRIDC12orf45
STRING (EMBL)C12orf45
ZODIACC12orf45
Ontologies - Pathways
QuickGOQ8N5I9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf45
Atlas of Cancer Signalling NetworkC12orf45
Wikipedia pathwaysC12orf45
Orthology - Evolution
OrthoDB121053
GeneTree (enSembl)ENSG00000151131
Phylogenetic Trees/Animal Genes : TreeFamC12orf45
HOVERGENQ8N5I9
HOGENOMQ8N5I9
Homologs : HomoloGeneC12orf45
Homology/Alignments : Family Browser (UCSC)C12orf45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf45
dbVarC12orf45
ClinVarC12orf45
1000_GenomesC12orf45 
Exome Variant ServerC12orf45
ExAC (Exome Aggregation Consortium)C12orf45 (select the gene name)
Genetic variants : HAPMAP121053
Genomic Variants (DGV)C12orf45 [DGVbeta]
DECIPHERC12orf45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf45 
Mutations
ICGC Data PortalC12orf45 
TCGA Data PortalC12orf45 
Broad Tumor PortalC12orf45
OASIS PortalC12orf45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf45
DgiDB (Drug Gene Interaction Database)C12orf45
DoCM (Curated mutations)C12orf45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf45 (select a term)
intoGenC12orf45
Cancer3DC12orf45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf45
Genetic Testing Registry C12orf45
NextProtQ8N5I9 [Medical]
TSGene121053
GENETestsC12orf45
Huge Navigator C12orf45 [HugePedia]
snp3D : Map Gene to Disease121053
BioCentury BCIQC12orf45
ClinGenC12orf45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121053
Chemical/Pharm GKB GenePA143485375
Clinical trialC12orf45
Miscellaneous
canSAR (ICR)C12orf45 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf45
EVEXC12orf45
GoPubMedC12orf45
iHOPC12orf45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:02:26 CEST 2017

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