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C12orf50 (chromosome 12 open reading frame 50)

Identity

Alias_symbol (synonym)FLJ35821
Other alias-
HGNC (Hugo) C12orf50
LocusID (NCBI) 160419
Atlas_Id 60913
Location 12q21.32  [Link to chromosome band 12q21]
Location_base_pair Starts at 87980039 and ends at 88029399 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHI1 (6q23.3) / C12orf50 (12q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf50   26665
Cards
Entrez_Gene (NCBI)C12orf50  160419  chromosome 12 open reading frame 50
Aliases
GeneCards (Weizmann)C12orf50
Ensembl hg19 (Hinxton)ENSG00000165805 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165805 [Gene_View]  chr12:87980039-88029399 [Contig_View]  C12orf50 [Vega]
ICGC DataPortalENSG00000165805
TCGA cBioPortalC12orf50
AceView (NCBI)C12orf50
Genatlas (Paris)C12orf50
WikiGenes160419
SOURCE (Princeton)C12orf50
Genetics Home Reference (NIH)C12orf50
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf50  -     chr12:87980039-88029399 -  12q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf50  -     12q21.32   [Description]    (hg19-Feb_2009)
EnsemblC12orf50 - 12q21.32 [CytoView hg19]  C12orf50 - 12q21.32 [CytoView hg38]
Mapping of homologs : NCBIC12orf50 [Mapview hg19]  C12orf50 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093140 AL833338 BC038413 BC062424 HQ448494
RefSeq transcript (Entrez)NM_152589
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf50
Cluster EST : UnigeneHs.112930 [ NCBI ]
CGAP (NCI)Hs.112930
Alternative Splicing GalleryENSG00000165805
Gene ExpressionC12orf50 [ NCBI-GEO ]   C12orf50 [ EBI - ARRAY_EXPRESS ]   C12orf50 [ SEEK ]   C12orf50 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160419
GTEX Portal (Tissue expression)C12orf50
Human Protein AtlasENSG00000165805-C12orf50 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA57
Splice isoforms : SwissVarQ8NA57
PhosPhoSitePlusQ8NA57
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C12orf50
DMDM Disease mutations160419
Blocks (Seattle)C12orf50
SuperfamilyQ8NA57
Human Protein Atlas [tissue]ENSG00000165805-C12orf50 [tissue]
Peptide AtlasQ8NA57
HPRD08764
IPIIPI00792780   IPI01022877   IPI01021163   IPI01020748   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA57
IntAct (EBI)Q8NA57
FunCoupENSG00000165805
BioGRIDC12orf50
STRING (EMBL)C12orf50
ZODIACC12orf50
Ontologies - Pathways
QuickGOQ8NA57
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC12orf50
Atlas of Cancer Signalling NetworkC12orf50
Wikipedia pathwaysC12orf50
Orthology - Evolution
OrthoDB160419
GeneTree (enSembl)ENSG00000165805
Phylogenetic Trees/Animal Genes : TreeFamC12orf50
HOVERGENQ8NA57
HOGENOMQ8NA57
Homologs : HomoloGeneC12orf50
Homology/Alignments : Family Browser (UCSC)C12orf50
Gene fusions - Rearrangements
Fusion: Tumor Portal C12orf50
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf50
dbVarC12orf50
ClinVarC12orf50
1000_GenomesC12orf50 
Exome Variant ServerC12orf50
ExAC (Exome Aggregation Consortium)ENSG00000165805
GNOMAD BrowserENSG00000165805
Genetic variants : HAPMAP160419
Genomic Variants (DGV)C12orf50 [DGVbeta]
DECIPHERC12orf50 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf50 
Mutations
ICGC Data PortalC12orf50 
TCGA Data PortalC12orf50 
Broad Tumor PortalC12orf50
OASIS PortalC12orf50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf50
DgiDB (Drug Gene Interaction Database)C12orf50
DoCM (Curated mutations)C12orf50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf50 (select a term)
intoGenC12orf50
Cancer3DC12orf50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf50
Genetic Testing Registry C12orf50
NextProtQ8NA57 [Medical]
TSGene160419
GENETestsC12orf50
Target ValidationC12orf50
Huge Navigator C12orf50 [HugePedia]
snp3D : Map Gene to Disease160419
BioCentury BCIQC12orf50
ClinGenC12orf50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160419
Chemical/Pharm GKB GenePA143485379
Clinical trialC12orf50
Miscellaneous
canSAR (ICR)C12orf50 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf50
EVEXC12orf50
GoPubMedC12orf50
iHOPC12orf50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:38 CET 2017

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