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C12orf54 (chromosome 12 open reading frame 54)

Identity

Alias_symbol (synonym)MGC35033
Other aliasHSD-29
HSD-30
HGNC (Hugo) C12orf54
LocusID (NCBI) 121273
Atlas_Id 60914
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 48482503 and ends at 48496514 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf54   28553
Cards
Entrez_Gene (NCBI)C12orf54  121273  chromosome 12 open reading frame 54
AliasesHSD-29; HSD-30
GeneCards (Weizmann)C12orf54
Ensembl hg19 (Hinxton)ENSG00000177627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177627 [Gene_View]  chr12:48482503-48496514 [Contig_View]  C12orf54 [Vega]
ICGC DataPortalENSG00000177627
TCGA cBioPortalC12orf54
AceView (NCBI)C12orf54
Genatlas (Paris)C12orf54
WikiGenes121273
SOURCE (Princeton)C12orf54
Genetics Home Reference (NIH)C12orf54
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf54  -     chr12:48482503-48496514 +  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf54  -     12q13.11   [Description]    (hg19-Feb_2009)
EnsemblC12orf54 - 12q13.11 [CytoView hg19]  C12orf54 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIC12orf54 [Mapview hg19]  C12orf54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY255793 AY255794 BC031670 BF510008 BQ429029
RefSeq transcript (Entrez)NM_152319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf54
Cluster EST : UnigeneHs.98202 [ NCBI ]
CGAP (NCI)Hs.98202
Alternative Splicing GalleryENSG00000177627
Gene ExpressionC12orf54 [ NCBI-GEO ]   C12orf54 [ EBI - ARRAY_EXPRESS ]   C12orf54 [ SEEK ]   C12orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121273
GTEX Portal (Tissue expression)C12orf54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6X4T0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6X4T0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6X4T0
Splice isoforms : SwissVarQ6X4T0
PhosPhoSitePlusQ6X4T0
Domains : Interpro (EBI)DUF4681   
Domain families : Pfam (Sanger)DUF4681 (PF15732)   
Domain families : Pfam (NCBI)pfam15732   
Conserved Domain (NCBI)C12orf54
DMDM Disease mutations121273
Blocks (Seattle)C12orf54
SuperfamilyQ6X4T0
Human Protein AtlasENSG00000177627
Peptide AtlasQ6X4T0
HPRD14596
IPIIPI00166903   IPI00450976   IPI00953424   IPI01022428   
Protein Interaction databases
DIP (DOE-UCLA)Q6X4T0
IntAct (EBI)Q6X4T0
FunCoupENSG00000177627
BioGRIDC12orf54
STRING (EMBL)C12orf54
ZODIACC12orf54
Ontologies - Pathways
QuickGOQ6X4T0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf54
Atlas of Cancer Signalling NetworkC12orf54
Wikipedia pathwaysC12orf54
Orthology - Evolution
OrthoDB121273
GeneTree (enSembl)ENSG00000177627
Phylogenetic Trees/Animal Genes : TreeFamC12orf54
HOVERGENQ6X4T0
HOGENOMQ6X4T0
Homologs : HomoloGeneC12orf54
Homology/Alignments : Family Browser (UCSC)C12orf54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf54
dbVarC12orf54
ClinVarC12orf54
1000_GenomesC12orf54 
Exome Variant ServerC12orf54
ExAC (Exome Aggregation Consortium)C12orf54 (select the gene name)
Genetic variants : HAPMAP121273
Genomic Variants (DGV)C12orf54 [DGVbeta]
DECIPHERC12orf54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf54 
Mutations
ICGC Data PortalC12orf54 
TCGA Data PortalC12orf54 
Broad Tumor PortalC12orf54
OASIS PortalC12orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf54
DgiDB (Drug Gene Interaction Database)C12orf54
DoCM (Curated mutations)C12orf54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf54 (select a term)
intoGenC12orf54
Cancer3DC12orf54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf54
Genetic Testing Registry C12orf54
NextProtQ6X4T0 [Medical]
TSGene121273
GENETestsC12orf54
Target ValidationC12orf54
Huge Navigator C12orf54 [HugePedia]
snp3D : Map Gene to Disease121273
BioCentury BCIQC12orf54
ClinGenC12orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121273
Chemical/Pharm GKB GenePA143485383
Clinical trialC12orf54
Miscellaneous
canSAR (ICR)C12orf54 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf54
EVEXC12orf54
GoPubMedC12orf54
iHOPC12orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:17 CEST 2017

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