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C12orf56 (chromosome 12 open reading frame 56)

Identity

Other alias-
HGNC (Hugo) C12orf56
LocusID (NCBI) 115749
Atlas_Id 60915
Location 12q14.2  [Link to chromosome band 12q14]
Location_base_pair Starts at 64660763 and ends at 64784345 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PPM1H (12q14.1) / C12orf56 (12q14.2)TBK1 (12q14.2) / C12orf56 (12q14.2)XPOT (12q14.2) / C12orf56 (12q14.2)
TBK1 C12orf56PPM1H C12orf56XPOT C12orf56

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf56   26967
Cards
Entrez_Gene (NCBI)C12orf56  115749  chromosome 12 open reading frame 56
Aliases
GeneCards (Weizmann)C12orf56
Ensembl hg19 (Hinxton) [Gene_View]  chr12:64660763-64784345 [Contig_View]  C12orf56 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:64660763-64784345 [Contig_View]  C12orf56 [Vega]
TCGA cBioPortalC12orf56
AceView (NCBI)C12orf56
Genatlas (Paris)C12orf56
WikiGenes115749
SOURCE (Princeton)C12orf56
Genetics Home Reference (NIH)C12orf56
Genomic and cartography
GoldenPath hg19 (UCSC)C12orf56  -     chr12:64660763-64784345 -  12q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C12orf56  -     12q14.2   [Description]    (hg38-Dec_2013)
EnsemblC12orf56 - 12q14.2 [CytoView hg19]  C12orf56 - 12q14.2 [CytoView hg38]
Mapping of homologs : NCBIC12orf56 [Mapview hg19]  C12orf56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC014352 BC015121 BC039369 BX089271
RefSeq transcript (Entrez)NM_001099676 NM_001170633
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)C12orf56
Cluster EST : UnigeneHs.535190 [ NCBI ]
CGAP (NCI)Hs.535190
Gene ExpressionC12orf56 [ NCBI-GEO ]   C12orf56 [ EBI - ARRAY_EXPRESS ]   C12orf56 [ SEEK ]   C12orf56 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115749
GTEX Portal (Tissue expression)C12orf56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXR9
Splice isoforms : SwissVarQ8IXR9
PhosPhoSitePlusQ8IXR9
Domains : Interpro (EBI)DUF4551   
Domain families : Pfam (Sanger)DUF4551 (PF15087)   
Domain families : Pfam (NCBI)pfam15087   
Conserved Domain (NCBI)C12orf56
DMDM Disease mutations115749
Blocks (Seattle)C12orf56
SuperfamilyQ8IXR9
Peptide AtlasQ8IXR9
IPIIPI00885072   IPI00217602   IPI01015553   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXR9
IntAct (EBI)Q8IXR9
BioGRIDC12orf56
STRING (EMBL)C12orf56
ZODIACC12orf56
Ontologies - Pathways
QuickGOQ8IXR9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf56
Atlas of Cancer Signalling NetworkC12orf56
Wikipedia pathwaysC12orf56
Orthology - Evolution
OrthoDB115749
Phylogenetic Trees/Animal Genes : TreeFamC12orf56
HOVERGENQ8IXR9
HOGENOMQ8IXR9
Homologs : HomoloGeneC12orf56
Homology/Alignments : Family Browser (UCSC)C12orf56
Gene fusions - Rearrangements
Fusion: TCGATBK1 C12orf56
Fusion: TCGAPPM1H C12orf56
Fusion: TCGAXPOT C12orf56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf56
dbVarC12orf56
ClinVarC12orf56
1000_GenomesC12orf56 
Exome Variant ServerC12orf56
ExAC (Exome Aggregation Consortium)C12orf56 (select the gene name)
Genetic variants : HAPMAP115749
Genomic Variants (DGV)C12orf56 [DGVbeta]
DECIPHER (Syndromes)12:64660763-64784345  
CONAN: Copy Number AnalysisC12orf56 
Mutations
ICGC Data PortalC12orf56 
TCGA Data PortalC12orf56 
Broad Tumor PortalC12orf56
OASIS PortalC12orf56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf56
DgiDB (Drug Gene Interaction Database)C12orf56
DoCM (Curated mutations)C12orf56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf56 (select a term)
intoGenC12orf56
Cancer3DC12orf56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf56
Genetic Testing Registry C12orf56
NextProtQ8IXR9 [Medical]
TSGene115749
GENETestsC12orf56
Huge Navigator C12orf56 [HugePedia]
snp3D : Map Gene to Disease115749
BioCentury BCIQC12orf56
ClinGenC12orf56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115749
Chemical/Pharm GKB GenePA143485385
Clinical trialC12orf56
Miscellaneous
canSAR (ICR)C12orf56 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf56
EVEXC12orf56
GoPubMedC12orf56
iHOPC12orf56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:25 CET 2017

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