Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C12orf57 (chromosome 12 open reading frame 57)

Identity

Alias_symbol (synonym)GRCC10
C10
Other alias
HGNC (Hugo) C12orf57
LocusID (NCBI) 113246
Atlas_Id 60916
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6943502 and ends at 6946003 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf57   29521
Cards
Entrez_Gene (NCBI)C12orf57  113246  chromosome 12 open reading frame 57
AliasesC10; GRCC10
GeneCards (Weizmann)C12orf57
Ensembl hg19 (Hinxton)ENSG00000111678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111678 [Gene_View]  chr12:6943502-6946003 [Contig_View]  C12orf57 [Vega]
ICGC DataPortalENSG00000111678
TCGA cBioPortalC12orf57
AceView (NCBI)C12orf57
Genatlas (Paris)C12orf57
WikiGenes113246
SOURCE (Princeton)C12orf57
Genetics Home Reference (NIH)C12orf57
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf57  -     chr12:6943502-6946003 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf57  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblC12orf57 - 12p13.31 [CytoView hg19]  C12orf57 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIC12orf57 [Mapview hg19]  C12orf57 [Mapview hg38]
OMIM218340   615140   
Gene and transcription
Genbank (Entrez)AK310266 AK311912 AV751928 BC009925 BE888740
RefSeq transcript (Entrez)NM_001301834 NM_001301836 NM_001301837 NM_001301838 NM_138425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf57
Cluster EST : UnigeneHs.405913 [ NCBI ]
CGAP (NCI)Hs.405913
Alternative Splicing GalleryENSG00000111678
Gene ExpressionC12orf57 [ NCBI-GEO ]   C12orf57 [ EBI - ARRAY_EXPRESS ]   C12orf57 [ SEEK ]   C12orf57 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113246
GTEX Portal (Tissue expression)C12orf57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99622   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99622  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99622
Splice isoforms : SwissVarQ99622
PhosPhoSitePlusQ99622
Domains : Interpro (EBI)P_C10   
Domain families : Pfam (Sanger)P_C10 (PF14974)   
Domain families : Pfam (NCBI)pfam14974   
Conserved Domain (NCBI)C12orf57
DMDM Disease mutations113246
Blocks (Seattle)C12orf57
SuperfamilyQ99622
Human Protein AtlasENSG00000111678
Peptide AtlasQ99622
HPRD13609
IPIIPI00016925   IPI01009852   
Protein Interaction databases
DIP (DOE-UCLA)Q99622
IntAct (EBI)Q99622
FunCoupENSG00000111678
BioGRIDC12orf57
STRING (EMBL)C12orf57
ZODIACC12orf57
Ontologies - Pathways
QuickGOQ99622
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkC12orf57
Atlas of Cancer Signalling NetworkC12orf57
Wikipedia pathwaysC12orf57
Orthology - Evolution
OrthoDB113246
GeneTree (enSembl)ENSG00000111678
Phylogenetic Trees/Animal Genes : TreeFamC12orf57
HOVERGENQ99622
HOGENOMQ99622
Homologs : HomoloGeneC12orf57
Homology/Alignments : Family Browser (UCSC)C12orf57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf57
dbVarC12orf57
ClinVarC12orf57
1000_GenomesC12orf57 
Exome Variant ServerC12orf57
ExAC (Exome Aggregation Consortium)C12orf57 (select the gene name)
Genetic variants : HAPMAP113246
Genomic Variants (DGV)C12orf57 [DGVbeta]
DECIPHERC12orf57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf57 
Mutations
ICGC Data PortalC12orf57 
TCGA Data PortalC12orf57 
Broad Tumor PortalC12orf57
OASIS PortalC12orf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf57
DgiDB (Drug Gene Interaction Database)C12orf57
DoCM (Curated mutations)C12orf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf57 (select a term)
intoGenC12orf57
Cancer3DC12orf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM218340    615140   
Orphanet
MedgenC12orf57
Genetic Testing Registry C12orf57
NextProtQ99622 [Medical]
TSGene113246
GENETestsC12orf57
Target ValidationC12orf57
Huge Navigator C12orf57 [HugePedia]
snp3D : Map Gene to Disease113246
BioCentury BCIQC12orf57
ClinGenC12orf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113246
Chemical/Pharm GKB GenePA143485386
Clinical trialC12orf57
Miscellaneous
canSAR (ICR)C12orf57 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf57
EVEXC12orf57
GoPubMedC12orf57
iHOPC12orf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:17 CEST 2017

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