Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C12orf60 (chromosome 12 open reading frame 60)

Identity

Alias_symbol (synonym)MGC47869
Other alias-
HGNC (Hugo) C12orf60
LocusID (NCBI) 144608
Atlas_Id 60917
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 14803572 and ends at 14823857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100507443 (2q33.3) / C12orf60 (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf60   28726
Cards
Entrez_Gene (NCBI)C12orf60  144608  chromosome 12 open reading frame 60
Aliases
GeneCards (Weizmann)C12orf60
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:14803572-14823857 [Contig_View]  C12orf60 [Vega]
TCGA cBioPortalC12orf60
AceView (NCBI)C12orf60
Genatlas (Paris)C12orf60
WikiGenes144608
SOURCE (Princeton)C12orf60
Genetics Home Reference (NIH)C12orf60
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf60  -     chr12:14803572-14823857 +  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf60  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblC12orf60 - 12p12.3 [CytoView hg19]  C12orf60 - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBIC12orf60 [Mapview hg19]  C12orf60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056213 AK289942 BC015546 BC029443 BC038836
RefSeq transcript (Entrez)NM_175874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf60
Cluster EST : UnigeneHs.659951 [ NCBI ]
CGAP (NCI)Hs.659951
Gene ExpressionC12orf60 [ NCBI-GEO ]   C12orf60 [ EBI - ARRAY_EXPRESS ]   C12orf60 [ SEEK ]   C12orf60 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144608
GTEX Portal (Tissue expression)C12orf60
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U649   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U649  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U649
Splice isoforms : SwissVarQ5U649
PhosPhoSitePlusQ5U649
Domains : Interpro (EBI)DUF4533   
Domain families : Pfam (Sanger)DUF4533 (PF15047)   
Domain families : Pfam (NCBI)pfam15047   
Conserved Domain (NCBI)C12orf60
DMDM Disease mutations144608
Blocks (Seattle)C12orf60
SuperfamilyQ5U649
Peptide AtlasQ5U649
HPRD11358
IPIIPI00217688   
Protein Interaction databases
DIP (DOE-UCLA)Q5U649
IntAct (EBI)Q5U649
BioGRIDC12orf60
STRING (EMBL)C12orf60
ZODIACC12orf60
Ontologies - Pathways
QuickGOQ5U649
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf60
Atlas of Cancer Signalling NetworkC12orf60
Wikipedia pathwaysC12orf60
Orthology - Evolution
OrthoDB144608
Phylogenetic Trees/Animal Genes : TreeFamC12orf60
HOVERGENQ5U649
HOGENOMQ5U649
Homologs : HomoloGeneC12orf60
Homology/Alignments : Family Browser (UCSC)C12orf60
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf60
dbVarC12orf60
ClinVarC12orf60
1000_GenomesC12orf60 
Exome Variant ServerC12orf60
ExAC (Exome Aggregation Consortium)C12orf60 (select the gene name)
Genetic variants : HAPMAP144608
Genomic Variants (DGV)C12orf60 [DGVbeta]
DECIPHERC12orf60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf60 
Mutations
ICGC Data PortalC12orf60 
TCGA Data PortalC12orf60 
Broad Tumor PortalC12orf60
OASIS PortalC12orf60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf60
DgiDB (Drug Gene Interaction Database)C12orf60
DoCM (Curated mutations)C12orf60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf60 (select a term)
intoGenC12orf60
Cancer3DC12orf60(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf60
Genetic Testing Registry C12orf60
NextProtQ5U649 [Medical]
TSGene144608
GENETestsC12orf60
Target ValidationC12orf60
Huge Navigator C12orf60 [HugePedia]
snp3D : Map Gene to Disease144608
BioCentury BCIQC12orf60
ClinGenC12orf60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144608
Chemical/Pharm GKB GenePA143485389
Clinical trialC12orf60
Miscellaneous
canSAR (ICR)C12orf60 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf60
EVEXC12orf60
GoPubMedC12orf60
iHOPC12orf60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:17 CEST 2017

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