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C12orf66 (chromosome 12 open reading frame 66)

Identity

Alias_symbol (synonym)FLJ32549
Other alias-
HGNC (Hugo) C12orf66
LocusID (NCBI) 144577
Atlas_Id 60919
Location 12q14.2  [Link to chromosome band 12q14]
Location_base_pair Starts at 64580092 and ends at 64616076 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C12orf66 (12q14.2) / KSR2 (12q24.22)C12orf66 (12q14.2) / TMEM132B (12q24.32)NPC2 (14q24.3) / C12orf66 (12q14.2)
OS9 (12q13.3) / C12orf66 (12q14.2)PLAT (8p11.21) / C12orf66 (12q14.2)OS9 C12orf66
PLAT C12orf66

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf66   26517
Cards
Entrez_Gene (NCBI)C12orf66  144577  chromosome 12 open reading frame 66
Aliases
GeneCards (Weizmann)C12orf66
Ensembl hg19 (Hinxton)ENSG00000174206 [Gene_View]  chr12:64580092-64616076 [Contig_View]  C12orf66 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174206 [Gene_View]  chr12:64580092-64616076 [Contig_View]  C12orf66 [Vega]
ICGC DataPortalENSG00000174206
TCGA cBioPortalC12orf66
AceView (NCBI)C12orf66
Genatlas (Paris)C12orf66
WikiGenes144577
SOURCE (Princeton)C12orf66
Genetics Home Reference (NIH)C12orf66
Genomic and cartography
GoldenPath hg19 (UCSC)C12orf66  -     chr12:64580092-64616076 -  12q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C12orf66  -     12q14.2   [Description]    (hg38-Dec_2013)
EnsemblC12orf66 - 12q14.2 [CytoView hg19]  C12orf66 - 12q14.2 [CytoView hg38]
Mapping of homologs : NCBIC12orf66 [Mapview hg19]  C12orf66 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057111 AK095383 AK129933 AV653957 BC036246
RefSeq transcript (Entrez)NM_001300940 NM_001300941 NM_152440
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)C12orf66
Cluster EST : UnigeneHs.505871 [ NCBI ]
CGAP (NCI)Hs.505871
Alternative Splicing GalleryENSG00000174206
Gene ExpressionC12orf66 [ NCBI-GEO ]   C12orf66 [ EBI - ARRAY_EXPRESS ]   C12orf66 [ SEEK ]   C12orf66 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144577
GTEX Portal (Tissue expression)C12orf66
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MD2
Splice isoforms : SwissVarQ96MD2
PhosPhoSitePlusQ96MD2
Domains : Interpro (EBI)DUF2003   
Domain families : Pfam (Sanger)DUF2003 (PF09404)   
Domain families : Pfam (NCBI)pfam09404   
Conserved Domain (NCBI)C12orf66
DMDM Disease mutations144577
Blocks (Seattle)C12orf66
SuperfamilyQ96MD2
Human Protein AtlasENSG00000174206
Peptide AtlasQ96MD2
HPRD08727
IPIIPI00401195   IPI00797825   IPI01014041   
Protein Interaction databases
DIP (DOE-UCLA)Q96MD2
IntAct (EBI)Q96MD2
FunCoupENSG00000174206
BioGRIDC12orf66
STRING (EMBL)C12orf66
ZODIACC12orf66
Ontologies - Pathways
QuickGOQ96MD2
Ontology : AmiGOmicrotubule cytoskeleton  intercellular bridge  
Ontology : EGO-EBImicrotubule cytoskeleton  intercellular bridge  
NDEx NetworkC12orf66
Atlas of Cancer Signalling NetworkC12orf66
Wikipedia pathwaysC12orf66
Orthology - Evolution
OrthoDB144577
GeneTree (enSembl)ENSG00000174206
Phylogenetic Trees/Animal Genes : TreeFamC12orf66
HOVERGENQ96MD2
HOGENOMQ96MD2
Homologs : HomoloGeneC12orf66
Homology/Alignments : Family Browser (UCSC)C12orf66
Gene fusions - Rearrangements
Fusion: TCGAOS9 C12orf66
Fusion: TCGAPLAT C12orf66
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf66
dbVarC12orf66
ClinVarC12orf66
1000_GenomesC12orf66 
Exome Variant ServerC12orf66
ExAC (Exome Aggregation Consortium)C12orf66 (select the gene name)
Genetic variants : HAPMAP144577
Genomic Variants (DGV)C12orf66 [DGVbeta]
DECIPHER (Syndromes)12:64580092-64616076  ENSG00000174206
CONAN: Copy Number AnalysisC12orf66 
Mutations
ICGC Data PortalC12orf66 
TCGA Data PortalC12orf66 
Broad Tumor PortalC12orf66
OASIS PortalC12orf66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf66  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf66
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf66
DgiDB (Drug Gene Interaction Database)C12orf66
DoCM (Curated mutations)C12orf66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf66 (select a term)
intoGenC12orf66
Cancer3DC12orf66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf66
Genetic Testing Registry C12orf66
NextProtQ96MD2 [Medical]
TSGene144577
GENETestsC12orf66
Huge Navigator C12orf66 [HugePedia]
snp3D : Map Gene to Disease144577
BioCentury BCIQC12orf66
ClinGenC12orf66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144577
Chemical/Pharm GKB GenePA162377974
Clinical trialC12orf66
Miscellaneous
canSAR (ICR)C12orf66 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf66
EVEXC12orf66
GoPubMedC12orf66
iHOPC12orf66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:26 CET 2017

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