Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C12orf71 (chromosome 12 open reading frame 71)

Identity

Alias (NCBI)-
HGNC (Hugo) C12orf71
HGNC Alias symbLOC728858
LocusID (NCBI) 728858
Atlas_Id 60920
Location 12p11.23  [Link to chromosome band 12p11]
Location_base_pair Starts at 27081057 and ends at 27082522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C12orf71   34452
Cards
Entrez_Gene (NCBI)C12orf71    chromosome 12 open reading frame 71
Aliases
GeneCards (Weizmann)C12orf71
Ensembl hg19 (Hinxton)ENSG00000214700 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214700 [Gene_View]  ENSG00000214700 [Sequence]  chr12:27081057-27082522 [Contig_View]  C12orf71 [Vega]
ICGC DataPortalENSG00000214700
TCGA cBioPortalC12orf71
AceView (NCBI)C12orf71
Genatlas (Paris)C12orf71
SOURCE (Princeton)C12orf71
Genetics Home Reference (NIH)C12orf71
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf71  -     chr12:27081057-27082522 -  12p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf71  -     12p11.23   [Description]    (hg19-Feb_2009)
GoldenPathC12orf71 - 12p11.23 [CytoView hg19]  C12orf71 - 12p11.23 [CytoView hg38]
ImmunoBaseENSG00000214700
genome Data Viewer NCBIC12orf71 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080406
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf71
Alternative Splicing GalleryENSG00000214700
Gene ExpressionC12orf71 [ NCBI-GEO ]   C12orf71 [ EBI - ARRAY_EXPRESS ]   C12orf71 [ SEEK ]   C12orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf71 [ Firebrowse - Broad ]
GenevisibleExpression of C12orf71 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728858
GTEX Portal (Tissue expression)C12orf71
Human Protein AtlasENSG00000214700-C12orf71 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTZ7
Splice isoforms : SwissVarA8MTZ7
PhosPhoSitePlusA8MTZ7
Domains : Interpro (EBI)DUF4640   
Domain families : Pfam (Sanger)DUF4640 (PF15480)   
Domain families : Pfam (NCBI)pfam15480   
Conserved Domain (NCBI)C12orf71
Blocks (Seattle)C12orf71
SuperfamilyA8MTZ7
Human Protein Atlas [tissue]ENSG00000214700-C12orf71 [tissue]
Peptide AtlasA8MTZ7
IPIIPI00794929   IPI00973437   
Protein Interaction databases
DIP (DOE-UCLA)A8MTZ7
IntAct (EBI)A8MTZ7
BioGRIDC12orf71
STRING (EMBL)C12orf71
ZODIACC12orf71
Ontologies - Pathways
QuickGOA8MTZ7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf71
Atlas of Cancer Signalling NetworkC12orf71
Wikipedia pathwaysC12orf71
Orthology - Evolution
OrthoDB728858
GeneTree (enSembl)ENSG00000214700
Phylogenetic Trees/Animal Genes : TreeFamC12orf71
HOGENOMA8MTZ7
Homologs : HomoloGeneC12orf71
Homology/Alignments : Family Browser (UCSC)C12orf71
Gene fusions - Rearrangements
Fusion : QuiverC12orf71
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf71 [hg38]
dbVarC12orf71
ClinVarC12orf71
MonarchC12orf71
1000_GenomesC12orf71 
Exome Variant ServerC12orf71
GNOMAD BrowserENSG00000214700
Varsome BrowserC12orf71
Genomic Variants (DGV)C12orf71 [DGVbeta]
DECIPHERC12orf71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf71 
Mutations
ICGC Data PortalC12orf71 
TCGA Data PortalC12orf71 
Broad Tumor PortalC12orf71
OASIS PortalC12orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC12orf71
Mutations and Diseases : HGMDC12orf71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf71
DgiDB (Drug Gene Interaction Database)C12orf71
DoCM (Curated mutations)C12orf71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf71 (select a term)
intoGenC12orf71
Cancer3DC12orf71(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC12orf71
MedgenC12orf71
Genetic Testing Registry C12orf71
NextProtA8MTZ7 [Medical]
GENETestsC12orf71
Target ValidationC12orf71
Huge Navigator C12orf71 [HugePedia]
ClinGenC12orf71
Clinical trials, drugs, therapy
MyCancerGenomeC12orf71
Protein Interactions : CTD
Pharm GKB GenePA162378036
Clinical trialC12orf71
Miscellaneous
canSAR (ICR)C12orf71 (select the gene name)
HarmonizomeC12orf71
DataMed IndexC12orf71
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf71
EVEXC12orf71
GoPubMedC12orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:47:32 CET 2020
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