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C12orf73 (chromosome 12 open reading frame 73)

Identity

Alias_symbol (synonym)FLJ13975
DKFZp547P055
Other alias-
HGNC (Hugo) C12orf73
LocusID (NCBI) 728568
Atlas_Id 60921
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 103950203 and ends at 103957215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C12orf73 (12q23.3) / GLT8D2 (12q23.3)C12orf73 (12q23.3) / NEK6 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf73   34450
Cards
Entrez_Gene (NCBI)C12orf73  728568  chromosome 12 open reading frame 73
Aliases
GeneCards (Weizmann)C12orf73
Ensembl hg19 (Hinxton)ENSG00000204954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204954 [Gene_View]  chr12:103950203-103957215 [Contig_View]  C12orf73 [Vega]
ICGC DataPortalENSG00000204954
TCGA cBioPortalC12orf73
AceView (NCBI)C12orf73
Genatlas (Paris)C12orf73
WikiGenes728568
SOURCE (Princeton)C12orf73
Genetics Home Reference (NIH)C12orf73
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf73  -     chr12:103950203-103957215 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf73  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblC12orf73 - 12q23.3 [CytoView hg19]  C12orf73 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIC12orf73 [Mapview hg19]  C12orf73 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA563681 AK024037 AL359596 BC039467 BC044618
RefSeq transcript (Entrez)NM_001135570
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf73
Cluster EST : UnigeneHs.42547 [ NCBI ]
CGAP (NCI)Hs.42547
Alternative Splicing GalleryENSG00000204954
Gene ExpressionC12orf73 [ NCBI-GEO ]   C12orf73 [ EBI - ARRAY_EXPRESS ]   C12orf73 [ SEEK ]   C12orf73 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf73 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728568
GTEX Portal (Tissue expression)C12orf73
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YU5
Splice isoforms : SwissVarQ69YU5
PhosPhoSitePlusQ69YU5
Domains : Interpro (EBI)DUF4516   
Domain families : Pfam (Sanger)DUF4516 (PF14990)   
Domain families : Pfam (NCBI)pfam14990   
Conserved Domain (NCBI)C12orf73
DMDM Disease mutations728568
Blocks (Seattle)C12orf73
SuperfamilyQ69YU5
Human Protein AtlasENSG00000204954
Peptide AtlasQ69YU5
IPIIPI00465410   IPI01021616   IPI01021404   IPI01020974   IPI01022061   
Protein Interaction databases
DIP (DOE-UCLA)Q69YU5
IntAct (EBI)Q69YU5
FunCoupENSG00000204954
BioGRIDC12orf73
STRING (EMBL)C12orf73
ZODIACC12orf73
Ontologies - Pathways
QuickGOQ69YU5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC12orf73
Atlas of Cancer Signalling NetworkC12orf73
Wikipedia pathwaysC12orf73
Orthology - Evolution
OrthoDB728568
GeneTree (enSembl)ENSG00000204954
Phylogenetic Trees/Animal Genes : TreeFamC12orf73
HOVERGENQ69YU5
HOGENOMQ69YU5
Homologs : HomoloGeneC12orf73
Homology/Alignments : Family Browser (UCSC)C12orf73
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf73 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf73
dbVarC12orf73
ClinVarC12orf73
1000_GenomesC12orf73 
Exome Variant ServerC12orf73
ExAC (Exome Aggregation Consortium)C12orf73 (select the gene name)
Genetic variants : HAPMAP728568
Genomic Variants (DGV)C12orf73 [DGVbeta]
DECIPHERC12orf73 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf73 
Mutations
ICGC Data PortalC12orf73 
TCGA Data PortalC12orf73 
Broad Tumor PortalC12orf73
OASIS PortalC12orf73 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf73  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf73
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf73
DgiDB (Drug Gene Interaction Database)C12orf73
DoCM (Curated mutations)C12orf73 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf73 (select a term)
intoGenC12orf73
Cancer3DC12orf73(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf73
Genetic Testing Registry C12orf73
NextProtQ69YU5 [Medical]
TSGene728568
GENETestsC12orf73
Target ValidationC12orf73
Huge Navigator C12orf73 [HugePedia]
snp3D : Map Gene to Disease728568
BioCentury BCIQC12orf73
ClinGenC12orf73
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728568
Chemical/Pharm GKB GenePA164716790
Clinical trialC12orf73
Miscellaneous
canSAR (ICR)C12orf73 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf73
EVEXC12orf73
GoPubMedC12orf73
iHOPC12orf73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:43 CEST 2017

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