Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C12orf74 (chromosome 12 open reading frame 74)

Identity

Other alias-
HGNC (Hugo) C12orf74
LocusID (NCBI) 338809
Atlas_Id 60922
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 92702843 and ends at 92708549 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf74   27887
Cards
Entrez_Gene (NCBI)C12orf74  338809  chromosome 12 open reading frame 74
Aliases
GeneCards (Weizmann)C12orf74
Ensembl hg19 (Hinxton)ENSG00000214215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214215 [Gene_View]  chr12:92702843-92708549 [Contig_View]  C12orf74 [Vega]
ICGC DataPortalENSG00000214215
TCGA cBioPortalC12orf74
AceView (NCBI)C12orf74
Genatlas (Paris)C12orf74
WikiGenes338809
SOURCE (Princeton)C12orf74
Genetics Home Reference (NIH)C12orf74
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf74  -     chr12:92702843-92708549 +  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf74  -     12q22   [Description]    (hg19-Feb_2009)
EnsemblC12orf74 - 12q22 [CytoView hg19]  C12orf74 - 12q22 [CytoView hg38]
Mapping of homologs : NCBIC12orf74 [Mapview hg19]  C12orf74 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043363 BC043364 BC105728 BC107813 DB196554
RefSeq transcript (Entrez)NM_001037671 NM_001178097
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf74
Cluster EST : UnigeneHs.326303 [ NCBI ]
CGAP (NCI)Hs.326303
Alternative Splicing GalleryENSG00000214215
Gene ExpressionC12orf74 [ NCBI-GEO ]   C12orf74 [ EBI - ARRAY_EXPRESS ]   C12orf74 [ SEEK ]   C12orf74 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf74 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338809
GTEX Portal (Tissue expression)C12orf74
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32Q52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32Q52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32Q52
Splice isoforms : SwissVarQ32Q52
PhosPhoSitePlusQ32Q52
Domains : Interpro (EBI)DUF4675   
Domain families : Pfam (Sanger)DUF4675 (PF15720)   
Domain families : Pfam (NCBI)pfam15720   
Conserved Domain (NCBI)C12orf74
DMDM Disease mutations338809
Blocks (Seattle)C12orf74
SuperfamilyQ32Q52
Human Protein AtlasENSG00000214215
Peptide AtlasQ32Q52
IPIIPI00401388   IPI00977818   
Protein Interaction databases
DIP (DOE-UCLA)Q32Q52
IntAct (EBI)Q32Q52
FunCoupENSG00000214215
BioGRIDC12orf74
STRING (EMBL)C12orf74
ZODIACC12orf74
Ontologies - Pathways
QuickGOQ32Q52
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf74
Atlas of Cancer Signalling NetworkC12orf74
Wikipedia pathwaysC12orf74
Orthology - Evolution
OrthoDB338809
GeneTree (enSembl)ENSG00000214215
Phylogenetic Trees/Animal Genes : TreeFamC12orf74
HOVERGENQ32Q52
HOGENOMQ32Q52
Homologs : HomoloGeneC12orf74
Homology/Alignments : Family Browser (UCSC)C12orf74
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf74 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf74
dbVarC12orf74
ClinVarC12orf74
1000_GenomesC12orf74 
Exome Variant ServerC12orf74
ExAC (Exome Aggregation Consortium)C12orf74 (select the gene name)
Genetic variants : HAPMAP338809
Genomic Variants (DGV)C12orf74 [DGVbeta]
DECIPHERC12orf74 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf74 
Mutations
ICGC Data PortalC12orf74 
TCGA Data PortalC12orf74 
Broad Tumor PortalC12orf74
OASIS PortalC12orf74 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf74  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf74
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf74
DgiDB (Drug Gene Interaction Database)C12orf74
DoCM (Curated mutations)C12orf74 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf74 (select a term)
intoGenC12orf74
Cancer3DC12orf74(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf74
Genetic Testing Registry C12orf74
NextProtQ32Q52 [Medical]
TSGene338809
GENETestsC12orf74
Target ValidationC12orf74
Huge Navigator C12orf74 [HugePedia]
snp3D : Map Gene to Disease338809
BioCentury BCIQC12orf74
ClinGenC12orf74
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338809
Chemical/Pharm GKB GenePA164716804
Clinical trialC12orf74
Miscellaneous
canSAR (ICR)C12orf74 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf74
EVEXC12orf74
GoPubMedC12orf74
iHOPC12orf74
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:43 CEST 2017

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