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C12orf75 (chromosome 12 open reading frame 75)

Identity

Alias_symbol (synonym)OCC-1
OCC1
AGD3
Other alias
HGNC (Hugo) C12orf75
LocusID (NCBI) 387882
Atlas_Id 43578
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 105330636 and ends at 105371518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C12orf75 (12q23.3) / C12orf75 (12q23.3)TBC1D8 (2q11.2) / C12orf75 (12q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf75   35164
Cards
Entrez_Gene (NCBI)C12orf75  387882  chromosome 12 open reading frame 75
AliasesAGD3; OCC-1; OCC1
GeneCards (Weizmann)C12orf75
Ensembl hg19 (Hinxton)ENSG00000235162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235162 [Gene_View]  chr12:105330636-105371518 [Contig_View]  C12orf75 [Vega]
ICGC DataPortalENSG00000235162
TCGA cBioPortalC12orf75
AceView (NCBI)C12orf75
Genatlas (Paris)C12orf75
WikiGenes387882
SOURCE (Princeton)C12orf75
Genetics Home Reference (NIH)C12orf75
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf75  -     chr12:105330636-105371518 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf75  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblC12orf75 - 12q23.3 [CytoView hg19]  C12orf75 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIC12orf75 [Mapview hg19]  C12orf75 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB735446 AB735447 AJ311377 AJ311378 AK056999
RefSeq transcript (Entrez)NM_001145199 NM_207376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf75
Cluster EST : UnigeneHs.368938 [ NCBI ]
CGAP (NCI)Hs.368938
Alternative Splicing GalleryENSG00000235162
Gene ExpressionC12orf75 [ NCBI-GEO ]   C12orf75 [ EBI - ARRAY_EXPRESS ]   C12orf75 [ SEEK ]   C12orf75 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf75 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387882
GTEX Portal (Tissue expression)C12orf75
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAD7
Splice isoforms : SwissVarQ8TAD7
PhosPhoSitePlusQ8TAD7
Domains : Interpro (EBI)OCC1   
Domain families : Pfam (Sanger)OCC1 (PF15506)   
Domain families : Pfam (NCBI)pfam15506   
Conserved Domain (NCBI)C12orf75
DMDM Disease mutations387882
Blocks (Seattle)C12orf75
SuperfamilyQ8TAD7
Human Protein AtlasENSG00000235162
Peptide AtlasQ8TAD7
HPRD17368
IPIIPI00922250   IPI01022857   IPI01022071   IPI01022223   IPI00152043   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAD7
IntAct (EBI)Q8TAD7
FunCoupENSG00000235162
BioGRIDC12orf75
STRING (EMBL)C12orf75
ZODIACC12orf75
Ontologies - Pathways
QuickGOQ8TAD7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf75
Atlas of Cancer Signalling NetworkC12orf75
Wikipedia pathwaysC12orf75
Orthology - Evolution
OrthoDB387882
GeneTree (enSembl)ENSG00000235162
Phylogenetic Trees/Animal Genes : TreeFamC12orf75
HOVERGENQ8TAD7
HOGENOMQ8TAD7
Homologs : HomoloGeneC12orf75
Homology/Alignments : Family Browser (UCSC)C12orf75
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf75 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf75
dbVarC12orf75
ClinVarC12orf75
1000_GenomesC12orf75 
Exome Variant ServerC12orf75
ExAC (Exome Aggregation Consortium)C12orf75 (select the gene name)
Genetic variants : HAPMAP387882
Genomic Variants (DGV)C12orf75 [DGVbeta]
DECIPHERC12orf75 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf75 
Mutations
ICGC Data PortalC12orf75 
TCGA Data PortalC12orf75 
Broad Tumor PortalC12orf75
OASIS PortalC12orf75 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf75  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf75
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf75
DgiDB (Drug Gene Interaction Database)C12orf75
DoCM (Curated mutations)C12orf75 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf75 (select a term)
intoGenC12orf75
Cancer3DC12orf75(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf75
Genetic Testing Registry C12orf75
NextProtQ8TAD7 [Medical]
TSGene387882
GENETestsC12orf75
Huge Navigator C12orf75 [HugePedia]
snp3D : Map Gene to Disease387882
BioCentury BCIQC12orf75
ClinGenC12orf75
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387882
Chemical/Pharm GKB GenePA164716815
Clinical trialC12orf75
Miscellaneous
canSAR (ICR)C12orf75 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf75
EVEXC12orf75
GoPubMedC12orf75
iHOPC12orf75
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:08:13 CEST 2017

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