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C12orf76 (chromosome 12 open reading frame 76)

Identity

Alias_symbol (synonym)FLJ40142
Other alias-
HGNC (Hugo) C12orf76
LocusID (NCBI) 400073
Atlas_Id 60923
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 110041177 and ends at 110067695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf76   33790
Cards
Entrez_Gene (NCBI)C12orf76  400073  chromosome 12 open reading frame 76
Aliases
GeneCards (Weizmann)C12orf76
Ensembl hg19 (Hinxton)ENSG00000174456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174456 [Gene_View]  chr12:110041177-110067695 [Contig_View]  C12orf76 [Vega]
ICGC DataPortalENSG00000174456
TCGA cBioPortalC12orf76
AceView (NCBI)C12orf76
Genatlas (Paris)C12orf76
WikiGenes400073
SOURCE (Princeton)C12orf76
Genetics Home Reference (NIH)C12orf76
Genomic and cartography
GoldenPath hg38 (UCSC)C12orf76  -     chr12:110041177-110067695 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C12orf76  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblC12orf76 - 12q24.11 [CytoView hg19]  C12orf76 - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIC12orf76 [Mapview hg19]  C12orf76 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021447 AK094845 AK097461 BC041968 BC046185
RefSeq transcript (Entrez)NM_207435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C12orf76
Cluster EST : UnigeneHs.732489 [ NCBI ]
CGAP (NCI)Hs.732489
Alternative Splicing GalleryENSG00000174456
Gene ExpressionC12orf76 [ NCBI-GEO ]   C12orf76 [ EBI - ARRAY_EXPRESS ]   C12orf76 [ SEEK ]   C12orf76 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf76 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400073
GTEX Portal (Tissue expression)C12orf76
Human Protein AtlasENSG00000174456-C12orf76 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N812   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N812  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N812
Splice isoforms : SwissVarQ8N812
PhosPhoSitePlusQ8N812
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C12orf76
DMDM Disease mutations400073
Blocks (Seattle)C12orf76
SuperfamilyQ8N812
Human Protein Atlas [tissue]ENSG00000174456-C12orf76 [tissue]
Peptide AtlasQ8N812
HPRD13443
IPIIPI00180792   IPI01022855   IPI01021231   IPI01020753   IPI01021508   IPI01021101   IPI01021566   IPI00895840   
Protein Interaction databases
DIP (DOE-UCLA)Q8N812
IntAct (EBI)Q8N812
FunCoupENSG00000174456
BioGRIDC12orf76
STRING (EMBL)C12orf76
ZODIACC12orf76
Ontologies - Pathways
QuickGOQ8N812
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf76
Atlas of Cancer Signalling NetworkC12orf76
Wikipedia pathwaysC12orf76
Orthology - Evolution
OrthoDB400073
GeneTree (enSembl)ENSG00000174456
Phylogenetic Trees/Animal Genes : TreeFamC12orf76
HOVERGENQ8N812
HOGENOMQ8N812
Homologs : HomoloGeneC12orf76
Homology/Alignments : Family Browser (UCSC)C12orf76
Gene fusions - Rearrangements
Fusion: Tumor Portal C12orf76
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf76 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf76
dbVarC12orf76
ClinVarC12orf76
1000_GenomesC12orf76 
Exome Variant ServerC12orf76
ExAC (Exome Aggregation Consortium)ENSG00000174456
GNOMAD BrowserENSG00000174456
Genetic variants : HAPMAP400073
Genomic Variants (DGV)C12orf76 [DGVbeta]
DECIPHERC12orf76 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC12orf76 
Mutations
ICGC Data PortalC12orf76 
TCGA Data PortalC12orf76 
Broad Tumor PortalC12orf76
OASIS PortalC12orf76 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf76  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf76
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf76
DgiDB (Drug Gene Interaction Database)C12orf76
DoCM (Curated mutations)C12orf76 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf76 (select a term)
intoGenC12orf76
Cancer3DC12orf76(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf76
Genetic Testing Registry C12orf76
NextProtQ8N812 [Medical]
TSGene400073
GENETestsC12orf76
Target ValidationC12orf76
Huge Navigator C12orf76 [HugePedia]
snp3D : Map Gene to Disease400073
BioCentury BCIQC12orf76
ClinGenC12orf76
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400073
Chemical/Pharm GKB GenePA165512406
Clinical trialC12orf76
Miscellaneous
canSAR (ICR)C12orf76 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf76
EVEXC12orf76
GoPubMedC12orf76
iHOPC12orf76
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:39 CET 2017

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