Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C12orf77 (chromosome 12 open reading frame 77)

Identity

Other alias-
HGNC (Hugo) C12orf77
LocusID (NCBI) 196415
Atlas_Id 60924
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 25146365 and ends at 25150373 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf77   27282
Cards
Entrez_Gene (NCBI)C12orf77  196415  chromosome 12 open reading frame 77
Aliases
GeneCards (Weizmann)C12orf77
Ensembl hg19 (Hinxton) [Gene_View]  chr12:25146365-25150373 [Contig_View]  C12orf77 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:25146365-25150373 [Contig_View]  C12orf77 [Vega]
TCGA cBioPortalC12orf77
AceView (NCBI)C12orf77
Genatlas (Paris)C12orf77
WikiGenes196415
SOURCE (Princeton)C12orf77
Genetics Home Reference (NIH)C12orf77
Genomic and cartography
GoldenPath hg19 (UCSC)C12orf77  -     chr12:25146365-25150373 -  12p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C12orf77  -     12p12.1   [Description]    (hg38-Dec_2013)
EnsemblC12orf77 - 12p12.1 [CytoView hg19]  C12orf77 - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBIC12orf77 [Mapview hg19]  C12orf77 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035880 BC046192 BC062789 LN608431 LN608432
RefSeq transcript (Entrez)NM_001101339
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)C12orf77
Cluster EST : UnigeneHs.434453 [ NCBI ]
CGAP (NCI)Hs.434453
Gene ExpressionC12orf77 [ NCBI-GEO ]   C12orf77 [ EBI - ARRAY_EXPRESS ]   C12orf77 [ SEEK ]   C12orf77 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf77 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196415
GTEX Portal (Tissue expression)C12orf77
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JDV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JDV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JDV5
Splice isoforms : SwissVarC9JDV5
PhosPhoSitePlusC9JDV5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C12orf77
DMDM Disease mutations196415
Blocks (Seattle)C12orf77
SuperfamilyC9JDV5
Peptide AtlasC9JDV5
IPIIPI00795494   IPI01022490   
Protein Interaction databases
DIP (DOE-UCLA)C9JDV5
IntAct (EBI)C9JDV5
BioGRIDC12orf77
STRING (EMBL)C12orf77
ZODIACC12orf77
Ontologies - Pathways
QuickGOC9JDV5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf77
Atlas of Cancer Signalling NetworkC12orf77
Wikipedia pathwaysC12orf77
Orthology - Evolution
OrthoDB196415
Phylogenetic Trees/Animal Genes : TreeFamC12orf77
HOVERGENC9JDV5
HOGENOMC9JDV5
Homologs : HomoloGeneC12orf77
Homology/Alignments : Family Browser (UCSC)C12orf77
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf77 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf77
dbVarC12orf77
ClinVarC12orf77
1000_GenomesC12orf77 
Exome Variant ServerC12orf77
ExAC (Exome Aggregation Consortium)C12orf77 (select the gene name)
Genetic variants : HAPMAP196415
Genomic Variants (DGV)C12orf77 [DGVbeta]
DECIPHER (Syndromes)12:25146365-25150373  
CONAN: Copy Number AnalysisC12orf77 
Mutations
ICGC Data PortalC12orf77 
TCGA Data PortalC12orf77 
Broad Tumor PortalC12orf77
OASIS PortalC12orf77 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC12orf77  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC12orf77
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C12orf77
DgiDB (Drug Gene Interaction Database)C12orf77
DoCM (Curated mutations)C12orf77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf77 (select a term)
intoGenC12orf77
Cancer3DC12orf77(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf77
Genetic Testing Registry C12orf77
NextProtC9JDV5 [Medical]
TSGene196415
GENETestsC12orf77
Huge Navigator C12orf77 [HugePedia]
snp3D : Map Gene to Disease196415
BioCentury BCIQC12orf77
ClinGenC12orf77
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196415
Chemical/Pharm GKB GenePA165512421
Clinical trialC12orf77
Miscellaneous
canSAR (ICR)C12orf77 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf77
EVEXC12orf77
GoPubMedC12orf77
iHOPC12orf77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:27 CET 2017

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