Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C12orf79 (chromosome 12 open reading frame 79)

Identity

Other alias-
HGNC (Hugo) C12orf79
LocusID (NCBI) 256021
Atlas_Id 60925
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 92378752 and ends at 92536447 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C12orf79   27409
Cards
Entrez_Gene (NCBI)C12orf79  256021  chromosome 12 open reading frame 79
Aliases
GeneCards (Weizmann)C12orf79
Ensembl hg19 (Hinxton)ENSG00000257242 [Gene_View]  chr12:92378752-92536447 [Contig_View]  C12orf79 [Vega]
Ensembl hg38 (Hinxton)ENSG00000257242 [Gene_View]  chr12:92378752-92536447 [Contig_View]  C12orf79 [Vega]
ICGC DataPortalENSG00000257242
TCGA cBioPortalC12orf79
AceView (NCBI)C12orf79
Genatlas (Paris)C12orf79
WikiGenes256021
SOURCE (Princeton)C12orf79
Genetics Home Reference (NIH)C12orf79
Genomic and cartography
GoldenPath hg19 (UCSC)C12orf79  -     chr12:92378752-92536447 -  12q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C12orf79  -     12q21.33   [Description]    (hg38-Dec_2013)
EnsemblC12orf79 - 12q21.33 [CytoView hg19]  C12orf79 - 12q21.33 [CytoView hg38]
Mapping of homologs : NCBIC12orf79 [Mapview hg19]  C12orf79 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086029 AK055439 BC029844 BC107595 BC118985
RefSeq transcript (Entrez)NM_001256373 NM_001256374 NM_001256375
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)C12orf79
Cluster EST : UnigeneHs.651357 [ NCBI ]
CGAP (NCI)Hs.651357
Alternative Splicing GalleryENSG00000257242
Gene ExpressionC12orf79 [ NCBI-GEO ]   C12orf79 [ EBI - ARRAY_EXPRESS ]   C12orf79 [ SEEK ]   C12orf79 [ MEM ]
Gene Expression Viewer (FireBrowse)C12orf79 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256021
GTEX Portal (Tissue expression)C12orf79
Protein : pattern, domain, 3D structure
UniProt/SwissProtG3V211   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtG3V211  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProG3V211
Splice isoforms : SwissVarG3V211
PhosPhoSitePlusG3V211
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C12orf79
DMDM Disease mutations256021
Blocks (Seattle)C12orf79
SuperfamilyG3V211
Human Protein AtlasENSG00000257242
Peptide AtlasG3V211
Protein Interaction databases
DIP (DOE-UCLA)G3V211
IntAct (EBI)G3V211
FunCoupENSG00000257242
BioGRIDC12orf79
STRING (EMBL)C12orf79
ZODIACC12orf79
Ontologies - Pathways
QuickGOG3V211
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC12orf79
Atlas of Cancer Signalling NetworkC12orf79
Wikipedia pathwaysC12orf79
Orthology - Evolution
OrthoDB256021
GeneTree (enSembl)ENSG00000257242
Phylogenetic Trees/Animal Genes : TreeFamC12orf79
HOVERGENG3V211
HOGENOMG3V211
Homologs : HomoloGeneC12orf79
Homology/Alignments : Family Browser (UCSC)C12orf79
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC12orf79 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C12orf79
dbVarC12orf79
ClinVarC12orf79
1000_GenomesC12orf79 
Exome Variant ServerC12orf79
ExAC (Exome Aggregation Consortium)C12orf79 (select the gene name)
Genetic variants : HAPMAP256021
Genomic Variants (DGV)C12orf79 [DGVbeta]
DECIPHER (Syndromes)12:92378752-92536447  ENSG00000257242
CONAN: Copy Number AnalysisC12orf79 
Mutations
ICGC Data PortalC12orf79 
TCGA Data PortalC12orf79 
Broad Tumor PortalC12orf79
OASIS PortalC12orf79 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC12orf79
BioMutasearch C12orf79
DgiDB (Drug Gene Interaction Database)C12orf79
DoCM (Curated mutations)C12orf79 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C12orf79 (select a term)
intoGenC12orf79
Cancer3DC12orf79(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC12orf79
Genetic Testing Registry C12orf79
NextProtG3V211 [Medical]
TSGene256021
GENETestsC12orf79
Huge Navigator C12orf79 [HugePedia]
snp3D : Map Gene to Disease256021
BioCentury BCIQC12orf79
ClinGenC12orf79
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256021
Clinical trialC12orf79
Miscellaneous
canSAR (ICR)C12orf79 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC12orf79
EVEXC12orf79
GoPubMedC12orf79
iHOPC12orf79
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:27 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.