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C13orf42 (chromosome 13 open reading frame 42)

Identity

Alias_namesLINC00371
long intergenic non-protein coding RNA 371
Other aliasLINC00372
HGNC (Hugo) C13orf42
LocusID (NCBI) 647166
Atlas_Id 79978
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 51082848 and ends at 51111228 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C13orf42   42693
Cards
Entrez_Gene (NCBI)C13orf42  647166  chromosome 13 open reading frame 42
AliasesLINC00371; LINC00372
GeneCards (Weizmann)C13orf42
Ensembl hg19 (Hinxton)ENSG00000226792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226792 [Gene_View]  chr13:51082848-51111228 [Contig_View]  C13orf42 [Vega]
ICGC DataPortalENSG00000226792
TCGA cBioPortalC13orf42
AceView (NCBI)C13orf42
Genatlas (Paris)C13orf42
WikiGenes647166
SOURCE (Princeton)C13orf42
Genetics Home Reference (NIH)C13orf42
Genomic and cartography
GoldenPath hg38 (UCSC)C13orf42  -     chr13:51082848-51111228 -  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C13orf42  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblC13orf42 - 13q14.3 [CytoView hg19]  C13orf42 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBIC13orf42 [Mapview hg19]  C13orf42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL040612 AL040615 BX096556 CX751673 DR156254
RefSeq transcript (Entrez)NM_001351589
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C13orf42
Cluster EST : UnigeneHs.539702 [ NCBI ]
CGAP (NCI)Hs.539702
Alternative Splicing GalleryENSG00000226792
Gene ExpressionC13orf42 [ NCBI-GEO ]   C13orf42 [ EBI - ARRAY_EXPRESS ]   C13orf42 [ SEEK ]   C13orf42 [ MEM ]
Gene Expression Viewer (FireBrowse)C13orf42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)647166
GTEX Portal (Tissue expression)C13orf42
Human Protein AtlasENSG00000226792-C13orf42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C13orf42
DMDM Disease mutations647166
Blocks (Seattle)C13orf42
Human Protein Atlas [tissue]ENSG00000226792-C13orf42 [tissue]
Protein Interaction databases
FunCoupENSG00000226792
BioGRIDC13orf42
STRING (EMBL)C13orf42
ZODIACC13orf42
Ontologies - Pathways
Huge Navigator C13orf42 [HugePedia]
snp3D : Map Gene to Disease647166
BioCentury BCIQC13orf42
ClinGenC13orf42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647166
Clinical trialC13orf42
Miscellaneous
canSAR (ICR)C13orf42 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC13orf42
EVEXC13orf42
GoPubMedC13orf42
iHOPC13orf42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:50 CET 2017

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