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C14orf166 (chromosome 14 open reading frame 166)

Identity

Alias_symbol (synonym)CGI-99
RLLM1
CLE
CLE7
LCRP369
hCLE1
Other aliasCGI99
HGNC (Hugo) C14orf166
LocusID (NCBI) 51637
Atlas_Id 43931
Location 14q22.1  [Link to chromosome band 14q22]
Location_base_pair Starts at 51989510 and ends at 52004702 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C14orf166 (14q22.1) / SLC25A21 (14q13.3)RB1 (13q14.2) / C14orf166 (14q22.1)ZMIZ2 (7p13) / C14orf166 (14q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C14orf166   23169
Cards
Entrez_Gene (NCBI)C14orf166  51637  chromosome 14 open reading frame 166
AliasesCGI-99; CGI99; CLE; CLE7; 
LCRP369; RLLM1; hCLE1
GeneCards (Weizmann)C14orf166
Ensembl hg19 (Hinxton)ENSG00000087302 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087302 [Gene_View]  chr14:51989510-52004702 [Contig_View]  C14orf166 [Vega]
ICGC DataPortalENSG00000087302
TCGA cBioPortalC14orf166
AceView (NCBI)C14orf166
Genatlas (Paris)C14orf166
WikiGenes51637
SOURCE (Princeton)C14orf166
Genetics Home Reference (NIH)C14orf166
Genomic and cartography
GoldenPath hg38 (UCSC)C14orf166  -     chr14:51989510-52004702 +  14q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C14orf166  -     14q22.1   [Description]    (hg19-Feb_2009)
EnsemblC14orf166 - 14q22.1 [CytoView hg19]  C14orf166 - 14q22.1 [CytoView hg38]
Mapping of homologs : NCBIC14orf166 [Mapview hg19]  C14orf166 [Mapview hg38]
OMIM610858   
Gene and transcription
Genbank (Entrez)AF087877 AF100755 AF151857 AK312004 AY817175
RefSeq transcript (Entrez)NM_016039
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C14orf166
Cluster EST : UnigeneHs.534457 [ NCBI ]
CGAP (NCI)Hs.534457
Alternative Splicing GalleryENSG00000087302
Gene ExpressionC14orf166 [ NCBI-GEO ]   C14orf166 [ EBI - ARRAY_EXPRESS ]   C14orf166 [ SEEK ]   C14orf166 [ MEM ]
Gene Expression Viewer (FireBrowse)C14orf166 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51637
GTEX Portal (Tissue expression)C14orf166
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y224   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y224  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y224
Splice isoforms : SwissVarQ9Y224
PhosPhoSitePlusQ9Y224
Domains : Interpro (EBI)UPF0568   
Domain families : Pfam (Sanger)RLL (PF10036)   
Domain families : Pfam (NCBI)pfam10036   
Conserved Domain (NCBI)C14orf166
DMDM Disease mutations51637
Blocks (Seattle)C14orf166
SuperfamilyQ9Y224
Human Protein AtlasENSG00000087302
Peptide AtlasQ9Y224
HPRD16615
IPIIPI00006980   IPI01026113   IPI01026016   IPI01026327   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y224
IntAct (EBI)Q9Y224
FunCoupENSG00000087302
BioGRIDC14orf166
STRING (EMBL)C14orf166
ZODIACC14orf166
Ontologies - Pathways
QuickGOQ9Y224
Ontology : AmiGORNA polymerase II core binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  microtubule organizing center  cytosol  transcription, DNA-templated  tRNA splicing, via endonucleolytic cleavage and ligation  tRNA splicing, via endonucleolytic cleavage and ligation  viral process  identical protein binding  positive regulation of transcription from RNA polymerase II promoter  perinuclear region of cytoplasm  RNA transport  tRNA-splicing ligase complex  
Ontology : EGO-EBIRNA polymerase II core binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  microtubule organizing center  cytosol  transcription, DNA-templated  tRNA splicing, via endonucleolytic cleavage and ligation  tRNA splicing, via endonucleolytic cleavage and ligation  viral process  identical protein binding  positive regulation of transcription from RNA polymerase II promoter  perinuclear region of cytoplasm  RNA transport  tRNA-splicing ligase complex  
NDEx NetworkC14orf166
Atlas of Cancer Signalling NetworkC14orf166
Wikipedia pathwaysC14orf166
Orthology - Evolution
OrthoDB51637
GeneTree (enSembl)ENSG00000087302
Phylogenetic Trees/Animal Genes : TreeFamC14orf166
HOVERGENQ9Y224
HOGENOMQ9Y224
Homologs : HomoloGeneC14orf166
Homology/Alignments : Family Browser (UCSC)C14orf166
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC14orf166 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C14orf166
dbVarC14orf166
ClinVarC14orf166
1000_GenomesC14orf166 
Exome Variant ServerC14orf166
ExAC (Exome Aggregation Consortium)C14orf166 (select the gene name)
Genetic variants : HAPMAP51637
Genomic Variants (DGV)C14orf166 [DGVbeta]
DECIPHERC14orf166 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC14orf166 
Mutations
ICGC Data PortalC14orf166 
TCGA Data PortalC14orf166 
Broad Tumor PortalC14orf166
OASIS PortalC14orf166 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC14orf166  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC14orf166
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C14orf166
DgiDB (Drug Gene Interaction Database)C14orf166
DoCM (Curated mutations)C14orf166 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C14orf166 (select a term)
intoGenC14orf166
Cancer3DC14orf166(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610858   
Orphanet
MedgenC14orf166
Genetic Testing Registry C14orf166
NextProtQ9Y224 [Medical]
TSGene51637
GENETestsC14orf166
Target ValidationC14orf166
Huge Navigator C14orf166 [HugePedia]
snp3D : Map Gene to Disease51637
BioCentury BCIQC14orf166
ClinGenC14orf166
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51637
Chemical/Pharm GKB GenePA134953268
Clinical trialC14orf166
Miscellaneous
canSAR (ICR)C14orf166 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC14orf166
EVEXC14orf166
GoPubMedC14orf166
iHOPC14orf166
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:26:00 CEST 2017

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