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C14orf169 (chromosome 14 open reading frame 169)

Identity

Alias_symbol (synonym)FLJ21802
NO66
MAPJD
Other aliasROX
URLC2
hsNO66
HGNC (Hugo) C14orf169
LocusID (NCBI) 79697
Atlas_Id 60933
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 73957639 and ends at 73960105 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C14orf169   20968
Cards
Entrez_Gene (NCBI)C14orf169  79697  chromosome 14 open reading frame 169
AliasesMAPJD; NO66; ROX; URLC2; 
hsNO66
GeneCards (Weizmann)C14orf169
Ensembl hg19 (Hinxton)ENSG00000170468 [Gene_View]  chr14:73957639-73960105 [Contig_View]  C14orf169 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170468 [Gene_View]  chr14:73957639-73960105 [Contig_View]  C14orf169 [Vega]
ICGC DataPortalENSG00000170468
TCGA cBioPortalC14orf169
AceView (NCBI)C14orf169
Genatlas (Paris)C14orf169
WikiGenes79697
SOURCE (Princeton)C14orf169
Genetics Home Reference (NIH)C14orf169
Genomic and cartography
GoldenPath hg19 (UCSC)C14orf169  -     chr14:73957639-73960105 +  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C14orf169  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblC14orf169 - 14q24.3 [CytoView hg19]  C14orf169 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIC14orf169 [Mapview hg19]  C14orf169 [Mapview hg38]
OMIM611919   
Gene and transcription
Genbank (Entrez)AB101204 AK025455 AK299994 AY390535 BC011350
RefSeq transcript (Entrez)NM_024644
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)C14orf169
Cluster EST : UnigeneHs.509916 [ NCBI ]
CGAP (NCI)Hs.509916
Alternative Splicing GalleryENSG00000170468
Gene ExpressionC14orf169 [ NCBI-GEO ]   C14orf169 [ EBI - ARRAY_EXPRESS ]   C14orf169 [ SEEK ]   C14orf169 [ MEM ]
Gene Expression Viewer (FireBrowse)C14orf169 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79697
GTEX Portal (Tissue expression)C14orf169
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6W3
Splice isoforms : SwissVarQ9H6W3
Catalytic activity : Enzyme1.14.11.- [ Enzyme-Expasy ]   1.14.11.-1.14.11.- [ IntEnz-EBI ]   1.14.11.- [ BRENDA ]   1.14.11.- [ KEGG ]   
PhosPhoSitePlusQ9H6W3
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)   
Domains : Interpro (EBI)JmjC_dom   
Domain families : Pfam (Sanger)Cupin_4 (PF08007)   
Domain families : Pfam (NCBI)pfam08007   
Domain families : Smart (EMBL)JmjC (SM00558)  
Conserved Domain (NCBI)C14orf169
DMDM Disease mutations79697
Blocks (Seattle)C14orf169
PDB (SRS)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H   
PDB (PDBSum)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H   
PDB (IMB)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H   
PDB (RSDB)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H   
Structural Biology KnowledgeBase4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H   
SCOP (Structural Classification of Proteins)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H   
CATH (Classification of proteins structures)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H   
SuperfamilyQ9H6W3
Human Protein AtlasENSG00000170468
Peptide AtlasQ9H6W3
HPRD12641
IPIIPI00002879   IPI00954824   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6W3
IntAct (EBI)Q9H6W3
FunCoupENSG00000170468
BioGRIDC14orf169
STRING (EMBL)C14orf169
ZODIACC14orf169
Ontologies - Pathways
QuickGOQ9H6W3
Ontology : AmiGOiron ion binding  protein binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  histone demethylase activity (H3-K4 specific)  histone H3-K4 demethylation  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  histone demethylase activity (H3-K36 specific)  oxidation-reduction process  histone H3-K36 demethylation  
Ontology : EGO-EBIiron ion binding  protein binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  histone demethylase activity (H3-K4 specific)  histone H3-K4 demethylation  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  histone demethylase activity (H3-K36 specific)  oxidation-reduction process  histone H3-K36 demethylation  
NDEx NetworkC14orf169
Atlas of Cancer Signalling NetworkC14orf169
Wikipedia pathwaysC14orf169
Orthology - Evolution
OrthoDB79697
GeneTree (enSembl)ENSG00000170468
Phylogenetic Trees/Animal Genes : TreeFamC14orf169
HOVERGENQ9H6W3
HOGENOMQ9H6W3
Homologs : HomoloGeneC14orf169
Homology/Alignments : Family Browser (UCSC)C14orf169
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC14orf169 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C14orf169
dbVarC14orf169
ClinVarC14orf169
1000_GenomesC14orf169 
Exome Variant ServerC14orf169
ExAC (Exome Aggregation Consortium)C14orf169 (select the gene name)
Genetic variants : HAPMAP79697
Genomic Variants (DGV)C14orf169 [DGVbeta]
DECIPHER (Syndromes)14:73957639-73960105  ENSG00000170468
CONAN: Copy Number AnalysisC14orf169 
Mutations
ICGC Data PortalC14orf169 
TCGA Data PortalC14orf169 
Broad Tumor PortalC14orf169
OASIS PortalC14orf169 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC14orf169
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C14orf169
DgiDB (Drug Gene Interaction Database)C14orf169
DoCM (Curated mutations)C14orf169 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C14orf169 (select a term)
intoGenC14orf169
Cancer3DC14orf169(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611919   
Orphanet
MedgenC14orf169
Genetic Testing Registry C14orf169
NextProtQ9H6W3 [Medical]
TSGene79697
GENETestsC14orf169
Huge Navigator C14orf169 [HugePedia]
snp3D : Map Gene to Disease79697
BioCentury BCIQC14orf169
ClinGenC14orf169
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79697
Chemical/Pharm GKB GenePA134919088
Clinical trialC14orf169
Miscellaneous
canSAR (ICR)C14orf169 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC14orf169
EVEXC14orf169
GoPubMedC14orf169
iHOPC14orf169
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:29 CET 2017

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