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C14orf39 (chromosome 14 open reading frame 39)

Identity

Alias_symbol (synonym)SIX6OS1
Other aliasSix6os1
HGNC (Hugo) C14orf39
LocusID (NCBI) 317761
Atlas_Id 60941
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 60435956 and ends at 60486046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCAF5 (14q24.1) / C14orf39 (14q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C14orf39   19849
Cards
Entrez_Gene (NCBI)C14orf39  317761  chromosome 14 open reading frame 39
AliasesSix6os1
GeneCards (Weizmann)C14orf39
Ensembl hg19 (Hinxton)ENSG00000179008 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179008 [Gene_View]  chr14:60435956-60486046 [Contig_View]  C14orf39 [Vega]
ICGC DataPortalENSG00000179008
TCGA cBioPortalC14orf39
AceView (NCBI)C14orf39
Genatlas (Paris)C14orf39
WikiGenes317761
SOURCE (Princeton)C14orf39
Genetics Home Reference (NIH)C14orf39
Genomic and cartography
GoldenPath hg38 (UCSC)C14orf39  -     chr14:60435956-60486046 -  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C14orf39  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblC14orf39 - 14q23.1 [CytoView hg19]  C14orf39 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBIC14orf39 [Mapview hg19]  C14orf39 [Mapview hg38]
OMIM617307   
Gene and transcription
Genbank (Entrez)AK098187 AL832219 BC125070 BC125071 DB447488
RefSeq transcript (Entrez)NM_174978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C14orf39
Cluster EST : UnigeneHs.335754 [ NCBI ]
CGAP (NCI)Hs.335754
Alternative Splicing GalleryENSG00000179008
Gene ExpressionC14orf39 [ NCBI-GEO ]   C14orf39 [ EBI - ARRAY_EXPRESS ]   C14orf39 [ SEEK ]   C14orf39 [ MEM ]
Gene Expression Viewer (FireBrowse)C14orf39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317761
GTEX Portal (Tissue expression)C14orf39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1H7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1H7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1H7
Splice isoforms : SwissVarQ8N1H7
PhosPhoSitePlusQ8N1H7
Domains : Interpro (EBI)SIX6OS1   
Domain families : Pfam (Sanger)S6OS1 (PF15676)   
Domain families : Pfam (NCBI)pfam15676   
Conserved Domain (NCBI)C14orf39
DMDM Disease mutations317761
Blocks (Seattle)C14orf39
SuperfamilyQ8N1H7
Human Protein AtlasENSG00000179008
Peptide AtlasQ8N1H7
HPRD08504
IPIIPI00166161   IPI01026189   IPI01026295   IPI01025541   IPI01025639   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1H7
IntAct (EBI)Q8N1H7
FunCoupENSG00000179008
BioGRIDC14orf39
STRING (EMBL)C14orf39
ZODIACC14orf39
Ontologies - Pathways
QuickGOQ8N1H7
Ontology : AmiGOcentral element  molecular_function  cellular_component  synapsis  multicellular organism development  spermatogenesis  meiotic DNA double-strand break processing involved in reciprocal meiotic recombination  oogenesis  regulation of sequence-specific DNA binding transcription factor activity  
Ontology : EGO-EBIcentral element  molecular_function  cellular_component  synapsis  multicellular organism development  spermatogenesis  meiotic DNA double-strand break processing involved in reciprocal meiotic recombination  oogenesis  regulation of sequence-specific DNA binding transcription factor activity  
NDEx NetworkC14orf39
Atlas of Cancer Signalling NetworkC14orf39
Wikipedia pathwaysC14orf39
Orthology - Evolution
OrthoDB317761
GeneTree (enSembl)ENSG00000179008
Phylogenetic Trees/Animal Genes : TreeFamC14orf39
HOVERGENQ8N1H7
HOGENOMQ8N1H7
Homologs : HomoloGeneC14orf39
Homology/Alignments : Family Browser (UCSC)C14orf39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC14orf39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C14orf39
dbVarC14orf39
ClinVarC14orf39
1000_GenomesC14orf39 
Exome Variant ServerC14orf39
ExAC (Exome Aggregation Consortium)C14orf39 (select the gene name)
Genetic variants : HAPMAP317761
Genomic Variants (DGV)C14orf39 [DGVbeta]
DECIPHERC14orf39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC14orf39 
Mutations
ICGC Data PortalC14orf39 
TCGA Data PortalC14orf39 
Broad Tumor PortalC14orf39
OASIS PortalC14orf39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC14orf39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC14orf39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C14orf39
DgiDB (Drug Gene Interaction Database)C14orf39
DoCM (Curated mutations)C14orf39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C14orf39 (select a term)
intoGenC14orf39
Cancer3DC14orf39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617307   
Orphanet
MedgenC14orf39
Genetic Testing Registry C14orf39
NextProtQ8N1H7 [Medical]
TSGene317761
GENETestsC14orf39
Target ValidationC14orf39
Huge Navigator C14orf39 [HugePedia]
snp3D : Map Gene to Disease317761
BioCentury BCIQC14orf39
ClinGenC14orf39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317761
Chemical/Pharm GKB GenePA134950036
Clinical trialC14orf39
Miscellaneous
canSAR (ICR)C14orf39 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC14orf39
EVEXC14orf39
GoPubMedC14orf39
iHOPC14orf39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:22 CEST 2017

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