Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C14orf79 (chromosome 14 open reading frame 79)

Identity

Other alias-
HGNC (Hugo) C14orf79
LocusID (NCBI) 122616
Atlas_Id 60942
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 104986279 and ends at 104995518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C14orf79   20126
Cards
Entrez_Gene (NCBI)C14orf79  122616  chromosome 14 open reading frame 79
Aliases
GeneCards (Weizmann)C14orf79
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:104986279-104995518 [Contig_View]  C14orf79 [Vega]
TCGA cBioPortalC14orf79
AceView (NCBI)C14orf79
Genatlas (Paris)C14orf79
WikiGenes122616
SOURCE (Princeton)C14orf79
Genetics Home Reference (NIH)C14orf79
Genomic and cartography
GoldenPath hg38 (UCSC)C14orf79  -     chr14:104986279-104995518 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C14orf79  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblC14orf79 - 14q32.33 [CytoView hg19]  C14orf79 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBIC14orf79 [Mapview hg19]  C14orf79 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF038188 AK057249 BC003539 BC011537 BC025175
RefSeq transcript (Entrez)NM_174891
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C14orf79
Cluster EST : UnigeneHs.27183 [ NCBI ]
CGAP (NCI)Hs.27183
Gene ExpressionC14orf79 [ NCBI-GEO ]   C14orf79 [ EBI - ARRAY_EXPRESS ]   C14orf79 [ SEEK ]   C14orf79 [ MEM ]
Gene Expression Viewer (FireBrowse)C14orf79 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122616
GTEX Portal (Tissue expression)C14orf79
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F83
Splice isoforms : SwissVarQ96F83
PhosPhoSitePlusQ96F83
Domains : Interpro (EBI)Clathrin-bd   
Domain families : Pfam (Sanger)Clathrin_bdg (PF15045)   
Domain families : Pfam (NCBI)pfam15045   
Conserved Domain (NCBI)C14orf79
DMDM Disease mutations122616
Blocks (Seattle)C14orf79
SuperfamilyQ96F83
Peptide AtlasQ96F83
HPRD12656
IPIIPI00055680   IPI01022299   IPI01022125   IPI01021310   IPI01022450   
Protein Interaction databases
DIP (DOE-UCLA)Q96F83
IntAct (EBI)Q96F83
BioGRIDC14orf79
STRING (EMBL)C14orf79
ZODIACC14orf79
Ontologies - Pathways
QuickGOQ96F83
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC14orf79
Atlas of Cancer Signalling NetworkC14orf79
Wikipedia pathwaysC14orf79
Orthology - Evolution
OrthoDB122616
Phylogenetic Trees/Animal Genes : TreeFamC14orf79
HOVERGENQ96F83
HOGENOMQ96F83
Homologs : HomoloGeneC14orf79
Homology/Alignments : Family Browser (UCSC)C14orf79
Gene fusions - Rearrangements
Tumor Fusion PortalC14orf79
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC14orf79 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C14orf79
dbVarC14orf79
ClinVarC14orf79
1000_GenomesC14orf79 
Exome Variant ServerC14orf79
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP122616
Genomic Variants (DGV)C14orf79 [DGVbeta]
DECIPHERC14orf79 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC14orf79 
Mutations
ICGC Data PortalC14orf79 
TCGA Data PortalC14orf79 
Broad Tumor PortalC14orf79
OASIS PortalC14orf79 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC14orf79  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC14orf79
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C14orf79
DgiDB (Drug Gene Interaction Database)C14orf79
DoCM (Curated mutations)C14orf79 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C14orf79 (select a term)
intoGenC14orf79
Cancer3DC14orf79(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC14orf79
MedgenC14orf79
Genetic Testing Registry C14orf79
NextProtQ96F83 [Medical]
TSGene122616
GENETestsC14orf79
Target ValidationC14orf79
Huge Navigator C14orf79 [HugePedia]
snp3D : Map Gene to Disease122616
BioCentury BCIQC14orf79
ClinGenC14orf79
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122616
Chemical/Pharm GKB GenePA134876308
Clinical trialC14orf79
Miscellaneous
canSAR (ICR)C14orf79 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC14orf79
EVEXC14orf79
GoPubMedC14orf79
iHOPC14orf79
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:44:41 CET 2017

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