Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C14orf80 (chromosome 14 open reading frame 80)

Identity

Other alias-
HGNC (Hugo) C14orf80
LocusID (NCBI) 283643
Atlas_Id 60943
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 105957586 and ends at 105965585 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C14orf80   20127
Cards
Entrez_Gene (NCBI)C14orf80  283643  chromosome 14 open reading frame 80
Aliases
GeneCards (Weizmann)C14orf80
Ensembl hg19 (Hinxton)ENSG00000185347 [Gene_View]  chr14:105957586-105965585 [Contig_View]  C14orf80 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185347 [Gene_View]  chr14:105957586-105965585 [Contig_View]  C14orf80 [Vega]
ICGC DataPortalENSG00000185347
TCGA cBioPortalC14orf80
AceView (NCBI)C14orf80
Genatlas (Paris)C14orf80
WikiGenes283643
SOURCE (Princeton)C14orf80
Genetics Home Reference (NIH)C14orf80
Genomic and cartography
GoldenPath hg19 (UCSC)C14orf80  -     chr14:105957586-105965585 +  14q32.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C14orf80  -     14q32.33   [Description]    (hg38-Dec_2013)
EnsemblC14orf80 - 14q32.33 [CytoView hg19]  C14orf80 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBIC14orf80 [Mapview hg19]  C14orf80 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024506 AW236560 BC016028 BX161477 BX248038
RefSeq transcript (Entrez)NM_001134875 NM_001134876 NM_001134877 NM_001198983 NM_173608
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)C14orf80
Cluster EST : UnigeneHs.720306 [ NCBI ]
CGAP (NCI)Hs.720306
Alternative Splicing GalleryENSG00000185347
Gene ExpressionC14orf80 [ NCBI-GEO ]   C14orf80 [ EBI - ARRAY_EXPRESS ]   C14orf80 [ SEEK ]   C14orf80 [ MEM ]
Gene Expression Viewer (FireBrowse)C14orf80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283643
GTEX Portal (Tissue expression)C14orf80
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SX3
Splice isoforms : SwissVarQ86SX3
PhosPhoSitePlusQ86SX3
Domains : Interpro (EBI)DUF4509    DUF4510   
Domain families : Pfam (Sanger)DUF4509 (PF14970)    DUF4510 (PF14971)   
Domain families : Pfam (NCBI)pfam14970    pfam14971   
Conserved Domain (NCBI)C14orf80
DMDM Disease mutations283643
Blocks (Seattle)C14orf80
SuperfamilyQ86SX3
Human Protein AtlasENSG00000185347
Peptide AtlasQ86SX3
HPRD12658
IPIIPI00742988   IPI00384142   IPI00384141   IPI01021027   IPI00059738   IPI00791279   IPI01018159   IPI00927519   IPI00926280   IPI00926987   IPI00926755   IPI00925464   
Protein Interaction databases
DIP (DOE-UCLA)Q86SX3
IntAct (EBI)Q86SX3
FunCoupENSG00000185347
BioGRIDC14orf80
STRING (EMBL)C14orf80
ZODIACC14orf80
Ontologies - Pathways
QuickGOQ86SX3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC14orf80
Atlas of Cancer Signalling NetworkC14orf80
Wikipedia pathwaysC14orf80
Orthology - Evolution
OrthoDB283643
GeneTree (enSembl)ENSG00000185347
Phylogenetic Trees/Animal Genes : TreeFamC14orf80
HOVERGENQ86SX3
HOGENOMQ86SX3
Homologs : HomoloGeneC14orf80
Homology/Alignments : Family Browser (UCSC)C14orf80
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC14orf80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C14orf80
dbVarC14orf80
ClinVarC14orf80
1000_GenomesC14orf80 
Exome Variant ServerC14orf80
ExAC (Exome Aggregation Consortium)C14orf80 (select the gene name)
Genetic variants : HAPMAP283643
Genomic Variants (DGV)C14orf80 [DGVbeta]
DECIPHER (Syndromes)14:105957586-105965585  ENSG00000185347
CONAN: Copy Number AnalysisC14orf80 
Mutations
ICGC Data PortalC14orf80 
TCGA Data PortalC14orf80 
Broad Tumor PortalC14orf80
OASIS PortalC14orf80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC14orf80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC14orf80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C14orf80
DgiDB (Drug Gene Interaction Database)C14orf80
DoCM (Curated mutations)C14orf80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C14orf80 (select a term)
intoGenC14orf80
Cancer3DC14orf80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC14orf80
Genetic Testing Registry C14orf80
NextProtQ86SX3 [Medical]
TSGene283643
GENETestsC14orf80
Huge Navigator C14orf80 [HugePedia]
snp3D : Map Gene to Disease283643
BioCentury BCIQC14orf80
ClinGenC14orf80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283643
Chemical/Pharm GKB GenePA134885988
Clinical trialC14orf80
Miscellaneous
canSAR (ICR)C14orf80 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC14orf80
EVEXC14orf80
GoPubMedC14orf80
iHOPC14orf80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:31 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.