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C14orf93 (chromosome 14 open reading frame 93)

Identity

Other aliasRTFC
HGNC (Hugo) C14orf93
LocusID (NCBI) 60686
Atlas_Id 56928
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 22986901 and ends at 23010201 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C14orf93   20162
Cards
Entrez_Gene (NCBI)C14orf93  60686  chromosome 14 open reading frame 93
AliasesRTFC
GeneCards (Weizmann)C14orf93
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:22986901-23010201 [Contig_View]  C14orf93 [Vega]
TCGA cBioPortalC14orf93
AceView (NCBI)C14orf93
Genatlas (Paris)C14orf93
WikiGenes60686
SOURCE (Princeton)C14orf93
Genetics Home Reference (NIH)C14orf93
Genomic and cartography
GoldenPath hg38 (UCSC)C14orf93  -     chr14:22986901-23010201 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C14orf93  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblC14orf93 - 14q11.2 [CytoView hg19]  C14orf93 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIC14orf93 [Mapview hg19]  C14orf93 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022216 AK023026 BC014299 BC045740 BX161383
RefSeq transcript (Entrez)NM_001130706 NM_001130708 NM_001282968 NM_001282969 NM_001282970 NM_021944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C14orf93
Cluster EST : UnigeneHs.255874 [ NCBI ]
CGAP (NCI)Hs.255874
Gene ExpressionC14orf93 [ NCBI-GEO ]   C14orf93 [ EBI - ARRAY_EXPRESS ]   C14orf93 [ SEEK ]   C14orf93 [ MEM ]
Gene Expression Viewer (FireBrowse)C14orf93 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60686
GTEX Portal (Tissue expression)C14orf93
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H972   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H972  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H972
Splice isoforms : SwissVarQ9H972
PhosPhoSitePlusQ9H972
Domains : Interpro (EBI)DUF4616   
Domain families : Pfam (Sanger)DUF4616 (PF15394)   
Domain families : Pfam (NCBI)pfam15394   
Conserved Domain (NCBI)C14orf93
DMDM Disease mutations60686
Blocks (Seattle)C14orf93
SuperfamilyQ9H972
Peptide AtlasQ9H972
IPIIPI00303980   IPI00303991   IPI01026169   IPI01025963   IPI01026057   IPI01025686   IPI01025805   IPI01025452   IPI01025643   IPI01025398   IPI01025063   IPI00797122   IPI01026212   
Protein Interaction databases
DIP (DOE-UCLA)Q9H972
IntAct (EBI)Q9H972
BioGRIDC14orf93
STRING (EMBL)C14orf93
ZODIACC14orf93
Ontologies - Pathways
QuickGOQ9H972
Ontology : AmiGORNA binding  protein binding  extracellular region  
Ontology : EGO-EBIRNA binding  protein binding  extracellular region  
NDEx NetworkC14orf93
Atlas of Cancer Signalling NetworkC14orf93
Wikipedia pathwaysC14orf93
Orthology - Evolution
OrthoDB60686
Phylogenetic Trees/Animal Genes : TreeFamC14orf93
HOVERGENQ9H972
HOGENOMQ9H972
Homologs : HomoloGeneC14orf93
Homology/Alignments : Family Browser (UCSC)C14orf93
Gene fusions - Rearrangements
Fusion: Tumor Portal C14orf93
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC14orf93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C14orf93
dbVarC14orf93
ClinVarC14orf93
1000_GenomesC14orf93 
Exome Variant ServerC14orf93
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP60686
Genomic Variants (DGV)C14orf93 [DGVbeta]
DECIPHERC14orf93 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC14orf93 
Mutations
ICGC Data PortalC14orf93 
TCGA Data PortalC14orf93 
Broad Tumor PortalC14orf93
OASIS PortalC14orf93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC14orf93  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC14orf93
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C14orf93
DgiDB (Drug Gene Interaction Database)C14orf93
DoCM (Curated mutations)C14orf93 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C14orf93 (select a term)
intoGenC14orf93
Cancer3DC14orf93(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC14orf93
Genetic Testing Registry C14orf93
NextProtQ9H972 [Medical]
TSGene60686
GENETestsC14orf93
Target ValidationC14orf93
Huge Navigator C14orf93 [HugePedia]
snp3D : Map Gene to Disease60686
BioCentury BCIQC14orf93
ClinGenC14orf93
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60686
Chemical/Pharm GKB GenePA134982493
Clinical trialC14orf93
Miscellaneous
canSAR (ICR)C14orf93 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC14orf93
EVEXC14orf93
GoPubMedC14orf93
iHOPC14orf93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:42:27 CET 2017

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