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C15orf27 (chromosome 15 open reading frame 27)

Identity

Other alias-
HGNC (Hugo) C15orf27
LocusID (NCBI) 123591
Atlas_Id 60946
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 76352299 and ends at 76497304 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf27   26763
Cards
Entrez_Gene (NCBI)C15orf27  123591  chromosome 15 open reading frame 27
Aliases
GeneCards (Weizmann)C15orf27
Ensembl hg19 (Hinxton)ENSG00000169758 [Gene_View]  chr15:76352299-76497304 [Contig_View]  C15orf27 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169758 [Gene_View]  chr15:76352299-76497304 [Contig_View]  C15orf27 [Vega]
ICGC DataPortalENSG00000169758
TCGA cBioPortalC15orf27
AceView (NCBI)C15orf27
Genatlas (Paris)C15orf27
WikiGenes123591
SOURCE (Princeton)C15orf27
Genetics Home Reference (NIH)C15orf27
Genomic and cartography
GoldenPath hg19 (UCSC)C15orf27  -     chr15:76352299-76497304 +  15q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C15orf27  -     15q24.2   [Description]    (hg38-Dec_2013)
EnsemblC15orf27 - 15q24.2 [CytoView hg19]  C15orf27 - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBIC15orf27 [Mapview hg19]  C15orf27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054866 AK056777 AK058126 AK095509 AK308676
RefSeq transcript (Entrez)NM_152335
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)C15orf27
Cluster EST : UnigeneHs.661411 [ NCBI ]
CGAP (NCI)Hs.661411
Alternative Splicing GalleryENSG00000169758
Gene ExpressionC15orf27 [ NCBI-GEO ]   C15orf27 [ EBI - ARRAY_EXPRESS ]   C15orf27 [ SEEK ]   C15orf27 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123591
GTEX Portal (Tissue expression)C15orf27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M3C6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M3C6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M3C6
Splice isoforms : SwissVarQ2M3C6
PhosPhoSitePlusQ2M3C6
Domains : Interpro (EBI)Channel_four-helix_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C15orf27
DMDM Disease mutations123591
Blocks (Seattle)C15orf27
SuperfamilyQ2M3C6
Human Protein AtlasENSG00000169758
Peptide AtlasQ2M3C6
HPRD08235
IPIIPI00784407   IPI00167656   
Protein Interaction databases
DIP (DOE-UCLA)Q2M3C6
IntAct (EBI)Q2M3C6
FunCoupENSG00000169758
BioGRIDC15orf27
STRING (EMBL)C15orf27
ZODIACC15orf27
Ontologies - Pathways
QuickGOQ2M3C6
Ontology : AmiGOvoltage-gated calcium channel activity  plasma membrane  calcium ion transport  integral component of membrane  ion transmembrane transport  calcium ion import  calcium ion transmembrane transport  membrane depolarization during action potential  
Ontology : EGO-EBIvoltage-gated calcium channel activity  plasma membrane  calcium ion transport  integral component of membrane  ion transmembrane transport  calcium ion import  calcium ion transmembrane transport  membrane depolarization during action potential  
NDEx NetworkC15orf27
Atlas of Cancer Signalling NetworkC15orf27
Wikipedia pathwaysC15orf27
Orthology - Evolution
OrthoDB123591
GeneTree (enSembl)ENSG00000169758
Phylogenetic Trees/Animal Genes : TreeFamC15orf27
HOVERGENQ2M3C6
HOGENOMQ2M3C6
Homologs : HomoloGeneC15orf27
Homology/Alignments : Family Browser (UCSC)C15orf27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf27
dbVarC15orf27
ClinVarC15orf27
1000_GenomesC15orf27 
Exome Variant ServerC15orf27
ExAC (Exome Aggregation Consortium)C15orf27 (select the gene name)
Genetic variants : HAPMAP123591
Genomic Variants (DGV)C15orf27 [DGVbeta]
DECIPHER (Syndromes)15:76352299-76497304  ENSG00000169758
CONAN: Copy Number AnalysisC15orf27 
Mutations
ICGC Data PortalC15orf27 
TCGA Data PortalC15orf27 
Broad Tumor PortalC15orf27
OASIS PortalC15orf27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf27
DgiDB (Drug Gene Interaction Database)C15orf27
DoCM (Curated mutations)C15orf27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf27 (select a term)
intoGenC15orf27
Cancer3DC15orf27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf27
Genetic Testing Registry C15orf27
NextProtQ2M3C6 [Medical]
TSGene123591
GENETestsC15orf27
Huge Navigator C15orf27 [HugePedia]
snp3D : Map Gene to Disease123591
BioCentury BCIQC15orf27
ClinGenC15orf27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123591
Chemical/Pharm GKB GenePA134968419
Clinical trialC15orf27
Miscellaneous
canSAR (ICR)C15orf27 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf27
EVEXC15orf27
GoPubMedC15orf27
iHOPC15orf27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:32 CET 2017

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