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C15orf39 (chromosome 15 open reading frame 39)

Identity

Alias_symbol (synonym)DKFZP434H132
FLJ46337
Other alias-
HGNC (Hugo) C15orf39
LocusID (NCBI) 56905
Atlas_Id 60949
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75494221 and ends at 75504510 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AAAS (12q13.13) / C15orf39 (15q24.2)C15orf39 (15q24.2) / LOC400946 ()C15orf39 (15q24.2) / TEAD4 (12p13.33)
EPS8L1 (19q13.42) / C15orf39 (15q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf39   24497
Cards
Entrez_Gene (NCBI)C15orf39  56905  chromosome 15 open reading frame 39
Aliases
GeneCards (Weizmann)C15orf39
Ensembl hg19 (Hinxton)ENSG00000167173 [Gene_View]  chr15:75494221-75504510 [Contig_View]  C15orf39 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167173 [Gene_View]  chr15:75494221-75504510 [Contig_View]  C15orf39 [Vega]
ICGC DataPortalENSG00000167173
TCGA cBioPortalC15orf39
AceView (NCBI)C15orf39
Genatlas (Paris)C15orf39
WikiGenes56905
SOURCE (Princeton)C15orf39
Genetics Home Reference (NIH)C15orf39
Genomic and cartography
GoldenPath hg19 (UCSC)C15orf39  -     chr15:75494221-75504510 +  15q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C15orf39  -     15q24.2   [Description]    (hg38-Dec_2013)
EnsemblC15orf39 - 15q24.2 [CytoView hg19]  C15orf39 - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBIC15orf39 [Mapview hg19]  C15orf39 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF063593 AF143881 AF495726 AK056589 AK057025
RefSeq transcript (Entrez)NM_015492
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)C15orf39
Cluster EST : UnigeneHs.17936 [ NCBI ]
CGAP (NCI)Hs.17936
Alternative Splicing GalleryENSG00000167173
Gene ExpressionC15orf39 [ NCBI-GEO ]   C15orf39 [ EBI - ARRAY_EXPRESS ]   C15orf39 [ SEEK ]   C15orf39 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56905
GTEX Portal (Tissue expression)C15orf39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRI6
Splice isoforms : SwissVarQ6ZRI6
PhosPhoSitePlusQ6ZRI6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C15orf39
DMDM Disease mutations56905
Blocks (Seattle)C15orf39
SuperfamilyQ6ZRI6
Human Protein AtlasENSG00000167173
Peptide AtlasQ6ZRI6
HPRD13154
IPIIPI00478772   IPI00760614   IPI00760813   IPI01010057   IPI00385956   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRI6
IntAct (EBI)Q6ZRI6
FunCoupENSG00000167173
BioGRIDC15orf39
STRING (EMBL)C15orf39
ZODIACC15orf39
Ontologies - Pathways
QuickGOQ6ZRI6
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkC15orf39
Atlas of Cancer Signalling NetworkC15orf39
Wikipedia pathwaysC15orf39
Orthology - Evolution
OrthoDB56905
GeneTree (enSembl)ENSG00000167173
Phylogenetic Trees/Animal Genes : TreeFamC15orf39
HOVERGENQ6ZRI6
HOGENOMQ6ZRI6
Homologs : HomoloGeneC15orf39
Homology/Alignments : Family Browser (UCSC)C15orf39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf39
dbVarC15orf39
ClinVarC15orf39
1000_GenomesC15orf39 
Exome Variant ServerC15orf39
ExAC (Exome Aggregation Consortium)C15orf39 (select the gene name)
Genetic variants : HAPMAP56905
Genomic Variants (DGV)C15orf39 [DGVbeta]
DECIPHER (Syndromes)15:75494221-75504510  ENSG00000167173
CONAN: Copy Number AnalysisC15orf39 
Mutations
ICGC Data PortalC15orf39 
TCGA Data PortalC15orf39 
Broad Tumor PortalC15orf39
OASIS PortalC15orf39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf39
DgiDB (Drug Gene Interaction Database)C15orf39
DoCM (Curated mutations)C15orf39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf39 (select a term)
intoGenC15orf39
Cancer3DC15orf39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf39
Genetic Testing Registry C15orf39
NextProtQ6ZRI6 [Medical]
TSGene56905
GENETestsC15orf39
Huge Navigator C15orf39 [HugePedia]
snp3D : Map Gene to Disease56905
BioCentury BCIQC15orf39
ClinGenC15orf39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56905
Chemical/Pharm GKB GenePA142672275
Clinical trialC15orf39
Miscellaneous
canSAR (ICR)C15orf39 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf39
EVEXC15orf39
GoPubMedC15orf39
iHOPC15orf39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:32 CET 2017

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