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C15orf40 (chromosome 15 open reading frame 40)

Identity

Alias_symbol (synonym)MGC29937
Other alias-
HGNC (Hugo) C15orf40
LocusID (NCBI) 123207
Atlas_Id 60950
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 83007950 and ends at 83011641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C15orf40 (15q25.2) / ZKSCAN3 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf40   28443
Cards
Entrez_Gene (NCBI)C15orf40  123207  chromosome 15 open reading frame 40
Aliases
GeneCards (Weizmann)C15orf40
Ensembl hg19 (Hinxton)ENSG00000169609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169609 [Gene_View]  chr15:83007950-83011641 [Contig_View]  C15orf40 [Vega]
ICGC DataPortalENSG00000169609
TCGA cBioPortalC15orf40
AceView (NCBI)C15orf40
Genatlas (Paris)C15orf40
WikiGenes123207
SOURCE (Princeton)C15orf40
Genetics Home Reference (NIH)C15orf40
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf40  -     chr15:83007950-83011641 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf40  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblC15orf40 - 15q25.2 [CytoView hg19]  C15orf40 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIC15orf40 [Mapview hg19]  C15orf40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA905778 AI239480 AJ705316 AK125586 AK311484
RefSeq transcript (Entrez)NM_001160113 NM_001160114 NM_001160115 NM_001160116 NM_144597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf40
Cluster EST : UnigeneHs.352541 [ NCBI ]
CGAP (NCI)Hs.352541
Alternative Splicing GalleryENSG00000169609
Gene ExpressionC15orf40 [ NCBI-GEO ]   C15orf40 [ EBI - ARRAY_EXPRESS ]   C15orf40 [ SEEK ]   C15orf40 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123207
GTEX Portal (Tissue expression)C15orf40
Human Protein AtlasENSG00000169609-C15orf40 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUR7
Splice isoforms : SwissVarQ8WUR7
PhosPhoSitePlusQ8WUR7
Domains : Interpro (EBI)DUF167   
Domain families : Pfam (Sanger)DUF167 (PF02594)   
Domain families : Pfam (NCBI)pfam02594   
Domain families : Smart (EMBL)DUF167 (SM01152)  
Conserved Domain (NCBI)C15orf40
DMDM Disease mutations123207
Blocks (Seattle)C15orf40
SuperfamilyQ8WUR7
Human Protein Atlas [tissue]ENSG00000169609-C15orf40 [tissue]
Peptide AtlasQ8WUR7
HPRD14538
IPIIPI01010038   IPI00930340   IPI00930377   IPI00930060   IPI00930117   IPI00783753   IPI01011533   IPI00966184   IPI00965909   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUR7
IntAct (EBI)Q8WUR7
FunCoupENSG00000169609
BioGRIDC15orf40
STRING (EMBL)C15orf40
ZODIACC15orf40
Ontologies - Pathways
QuickGOQ8WUR7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf40
Atlas of Cancer Signalling NetworkC15orf40
Wikipedia pathwaysC15orf40
Orthology - Evolution
OrthoDB123207
GeneTree (enSembl)ENSG00000169609
Phylogenetic Trees/Animal Genes : TreeFamC15orf40
HOVERGENQ8WUR7
HOGENOMQ8WUR7
Homologs : HomoloGeneC15orf40
Homology/Alignments : Family Browser (UCSC)C15orf40
Gene fusions - Rearrangements
Tumor Fusion PortalC15orf40
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf40
dbVarC15orf40
ClinVarC15orf40
1000_GenomesC15orf40 
Exome Variant ServerC15orf40
ExAC (Exome Aggregation Consortium)ENSG00000169609
GNOMAD BrowserENSG00000169609
Genetic variants : HAPMAP123207
Genomic Variants (DGV)C15orf40 [DGVbeta]
DECIPHERC15orf40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf40 
Mutations
ICGC Data PortalC15orf40 
TCGA Data PortalC15orf40 
Broad Tumor PortalC15orf40
OASIS PortalC15orf40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf40
DgiDB (Drug Gene Interaction Database)C15orf40
DoCM (Curated mutations)C15orf40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf40 (select a term)
intoGenC15orf40
Cancer3DC15orf40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC15orf40
MedgenC15orf40
Genetic Testing Registry C15orf40
NextProtQ8WUR7 [Medical]
TSGene123207
GENETestsC15orf40
Target ValidationC15orf40
Huge Navigator C15orf40 [HugePedia]
snp3D : Map Gene to Disease123207
BioCentury BCIQC15orf40
ClinGenC15orf40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123207
Chemical/Pharm GKB GenePA142672276
Clinical trialC15orf40
Miscellaneous
canSAR (ICR)C15orf40 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf40
EVEXC15orf40
GoPubMedC15orf40
iHOPC15orf40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:30:59 CET 2017

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