Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C15orf41 (chromosome 15 open reading frame 41)

Identity

Alias_symbol (synonym)HH114
MGC11326
FLJ22851
Other alias
HGNC (Hugo) C15orf41
LocusID (NCBI) 84529
Atlas_Id 60951
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 36871804 and ends at 37102461 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C15orf41 (15q14) / FAM98B (15q14)C15orf41 (15q14) / LYSMD4 (15q26.3)C15orf41 (15q14) / MEIS2 (15q14)
CSMD1 (8p23.2) / C15orf41 (15q14)UBAP2 (9p13.3) / C15orf41 (15q14)WWOX (16q23.1) / C15orf41 (15q14)
C15orf41 FAM98BC15orf41 LYSMD4C15orf41 MEIS2
WWOX C15orf41CSMD1 C15orf41UBAP2 C15orf41

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf41   26929
Cards
Entrez_Gene (NCBI)C15orf41  84529  chromosome 15 open reading frame 41
AliasesHH114
GeneCards (Weizmann)C15orf41
Ensembl hg19 (Hinxton)ENSG00000186073 [Gene_View]  chr15:36871804-37102461 [Contig_View]  C15orf41 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186073 [Gene_View]  chr15:36871804-37102461 [Contig_View]  C15orf41 [Vega]
ICGC DataPortalENSG00000186073
TCGA cBioPortalC15orf41
AceView (NCBI)C15orf41
Genatlas (Paris)C15orf41
WikiGenes84529
SOURCE (Princeton)C15orf41
Genetics Home Reference (NIH)C15orf41
Genomic and cartography
GoldenPath hg19 (UCSC)C15orf41  -     chr15:36871804-37102461 +  15q14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C15orf41  -     15q14   [Description]    (hg38-Dec_2013)
EnsemblC15orf41 - 15q14 [CytoView hg19]  C15orf41 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIC15orf41 [Mapview hg19]  C15orf41 [Mapview hg38]
OMIM615626   615631   
Gene and transcription
Genbank (Entrez)AA581466 AF114263 AK026504 AK315446 AL526474
RefSeq transcript (Entrez)NM_001130010 NM_001290232 NM_001290233 NM_032499
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_034055 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)C15orf41
Cluster EST : UnigeneHs.48348 [ NCBI ]
CGAP (NCI)Hs.48348
Alternative Splicing GalleryENSG00000186073
Gene ExpressionC15orf41 [ NCBI-GEO ]   C15orf41 [ EBI - ARRAY_EXPRESS ]   C15orf41 [ SEEK ]   C15orf41 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84529
GTEX Portal (Tissue expression)C15orf41
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2V0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2V0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2V0
Splice isoforms : SwissVarQ9Y2V0
PhosPhoSitePlusQ9Y2V0
Domains : Interpro (EBI)DUF_TPD   
Domain families : Pfam (Sanger)TPD (PF14811)   
Domain families : Pfam (NCBI)pfam14811   
Conserved Domain (NCBI)C15orf41
DMDM Disease mutations84529
Blocks (Seattle)C15orf41
SuperfamilyQ9Y2V0
Human Protein AtlasENSG00000186073
Peptide AtlasQ9Y2V0
HPRD13650
IPIIPI00032525   IPI00796879   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2V0
IntAct (EBI)Q9Y2V0
FunCoupENSG00000186073
BioGRIDC15orf41
STRING (EMBL)C15orf41
ZODIACC15orf41
Ontologies - Pathways
QuickGOQ9Y2V0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf41
Atlas of Cancer Signalling NetworkC15orf41
Wikipedia pathwaysC15orf41
Orthology - Evolution
OrthoDB84529
GeneTree (enSembl)ENSG00000186073
Phylogenetic Trees/Animal Genes : TreeFamC15orf41
HOVERGENQ9Y2V0
HOGENOMQ9Y2V0
Homologs : HomoloGeneC15orf41
Homology/Alignments : Family Browser (UCSC)C15orf41
Gene fusions - Rearrangements
Fusion: TCGAC15orf41 FAM98B
Fusion: TCGAC15orf41 LYSMD4
Fusion: TCGAC15orf41 MEIS2
Fusion: TCGAWWOX C15orf41
Fusion: TCGACSMD1 C15orf41
Fusion: TCGAUBAP2 C15orf41
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf41
dbVarC15orf41
ClinVarC15orf41
1000_GenomesC15orf41 
Exome Variant ServerC15orf41
ExAC (Exome Aggregation Consortium)C15orf41 (select the gene name)
Genetic variants : HAPMAP84529
Genomic Variants (DGV)C15orf41 [DGVbeta]
DECIPHER (Syndromes)15:36871804-37102461  ENSG00000186073
CONAN: Copy Number AnalysisC15orf41 
Mutations
ICGC Data PortalC15orf41 
TCGA Data PortalC15orf41 
Broad Tumor PortalC15orf41
OASIS PortalC15orf41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf41
DgiDB (Drug Gene Interaction Database)C15orf41
DoCM (Curated mutations)C15orf41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf41 (select a term)
intoGenC15orf41
Cancer3DC15orf41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615626    615631   
Orphanet
MedgenC15orf41
Genetic Testing Registry C15orf41
NextProtQ9Y2V0 [Medical]
TSGene84529
GENETestsC15orf41
Huge Navigator C15orf41 [HugePedia]
snp3D : Map Gene to Disease84529
BioCentury BCIQC15orf41
ClinGenC15orf41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84529
Chemical/Pharm GKB GenePA142672277
Clinical trialC15orf41
Miscellaneous
canSAR (ICR)C15orf41 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf41
EVEXC15orf41
GoPubMedC15orf41
iHOPC15orf41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:33 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.