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C15orf43 (chromosome 15 open reading frame 43)

Identity

Other alias-
HGNC (Hugo) C15orf43
LocusID (NCBI) 145645
Atlas_Id 60952
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45248900 and ends at 45271421 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GALK2 (15q21.1) / C15orf43 (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf43   28520
Cards
Entrez_Gene (NCBI)C15orf43  145645  chromosome 15 open reading frame 43
Aliases
GeneCards (Weizmann)C15orf43
Ensembl hg19 (Hinxton)ENSG00000167014 [Gene_View]  chr15:45248900-45271421 [Contig_View]  C15orf43 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167014 [Gene_View]  chr15:45248900-45271421 [Contig_View]  C15orf43 [Vega]
ICGC DataPortalENSG00000167014
TCGA cBioPortalC15orf43
AceView (NCBI)C15orf43
Genatlas (Paris)C15orf43
WikiGenes145645
SOURCE (Princeton)C15orf43
Genetics Home Reference (NIH)C15orf43
Genomic and cartography
GoldenPath hg19 (UCSC)C15orf43  -     chr15:45248900-45271421 +  15q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C15orf43  -     15q21.1   [Description]    (hg38-Dec_2013)
EnsemblC15orf43 - 15q21.1 [CytoView hg19]  C15orf43 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBIC15orf43 [Mapview hg19]  C15orf43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029537 DQ890983 DQ894158
RefSeq transcript (Entrez)NM_152448
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)C15orf43
Cluster EST : UnigeneHs.567701 [ NCBI ]
CGAP (NCI)Hs.567701
Alternative Splicing GalleryENSG00000167014
Gene ExpressionC15orf43 [ NCBI-GEO ]   C15orf43 [ EBI - ARRAY_EXPRESS ]   C15orf43 [ SEEK ]   C15orf43 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145645
GTEX Portal (Tissue expression)C15orf43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHR7
Splice isoforms : SwissVarQ8NHR7
PhosPhoSitePlusQ8NHR7
Domains : Interpro (EBI)DUF4557   
Domain families : Pfam (Sanger)DUF4557 (PF15101)   
Domain families : Pfam (NCBI)pfam15101   
Conserved Domain (NCBI)C15orf43
DMDM Disease mutations145645
Blocks (Seattle)C15orf43
SuperfamilyQ8NHR7
Human Protein AtlasENSG00000167014
Peptide AtlasQ8NHR7
HPRD17528
IPIIPI00169304   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHR7
IntAct (EBI)Q8NHR7
FunCoupENSG00000167014
BioGRIDC15orf43
STRING (EMBL)C15orf43
ZODIACC15orf43
Ontologies - Pathways
QuickGOQ8NHR7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf43
Atlas of Cancer Signalling NetworkC15orf43
Wikipedia pathwaysC15orf43
Orthology - Evolution
OrthoDB145645
GeneTree (enSembl)ENSG00000167014
Phylogenetic Trees/Animal Genes : TreeFamC15orf43
HOVERGENQ8NHR7
HOGENOMQ8NHR7
Homologs : HomoloGeneC15orf43
Homology/Alignments : Family Browser (UCSC)C15orf43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf43
dbVarC15orf43
ClinVarC15orf43
1000_GenomesC15orf43 
Exome Variant ServerC15orf43
ExAC (Exome Aggregation Consortium)C15orf43 (select the gene name)
Genetic variants : HAPMAP145645
Genomic Variants (DGV)C15orf43 [DGVbeta]
DECIPHER (Syndromes)15:45248900-45271421  ENSG00000167014
CONAN: Copy Number AnalysisC15orf43 
Mutations
ICGC Data PortalC15orf43 
TCGA Data PortalC15orf43 
Broad Tumor PortalC15orf43
OASIS PortalC15orf43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf43
DgiDB (Drug Gene Interaction Database)C15orf43
DoCM (Curated mutations)C15orf43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf43 (select a term)
intoGenC15orf43
Cancer3DC15orf43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf43
Genetic Testing Registry C15orf43
NextProtQ8NHR7 [Medical]
TSGene145645
GENETestsC15orf43
Huge Navigator C15orf43 [HugePedia]
snp3D : Map Gene to Disease145645
BioCentury BCIQC15orf43
ClinGenC15orf43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145645
Chemical/Pharm GKB GenePA143485393
Clinical trialC15orf43
Miscellaneous
canSAR (ICR)C15orf43 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf43
EVEXC15orf43
GoPubMedC15orf43
iHOPC15orf43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:33 CET 2017

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