Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C15orf52 (chromosome 15 open reading frame 52)

Identity

Alias_symbol (synonym)FLJ43339
Other alias-
HGNC (Hugo) C15orf52
LocusID (NCBI) 388115
Atlas_Id 60953
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40331452 and ends at 40340967 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf52   33488
Cards
Entrez_Gene (NCBI)C15orf52  388115  chromosome 15 open reading frame 52
Aliases
GeneCards (Weizmann)C15orf52
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:40331452-40340967 [Contig_View]  C15orf52 [Vega]
TCGA cBioPortalC15orf52
AceView (NCBI)C15orf52
Genatlas (Paris)C15orf52
WikiGenes388115
SOURCE (Princeton)C15orf52
Genetics Home Reference (NIH)C15orf52
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf52  -     chr15:40331452-40340967 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf52  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblC15orf52 - 15q15.1 [CytoView hg19]  C15orf52 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIC15orf52 [Mapview hg19]  C15orf52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124643 AK125329 AK126035 AK126485 BC015670
RefSeq transcript (Entrez)NM_207380
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf52
Cluster EST : UnigeneHs.32433 [ NCBI ]
CGAP (NCI)Hs.32433
Gene ExpressionC15orf52 [ NCBI-GEO ]   C15orf52 [ EBI - ARRAY_EXPRESS ]   C15orf52 [ SEEK ]   C15orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388115
GTEX Portal (Tissue expression)C15orf52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUT6
Splice isoforms : SwissVarQ6ZUT6
PhosPhoSitePlusQ6ZUT6
Domains : Interpro (EBI)DUF4594   
Domain families : Pfam (Sanger)DUF4594 (PF15266)   
Domain families : Pfam (NCBI)pfam15266   
Conserved Domain (NCBI)C15orf52
DMDM Disease mutations388115
Blocks (Seattle)C15orf52
SuperfamilyQ6ZUT6
Peptide AtlasQ6ZUT6
HPRD16964
IPIIPI00412676   IPI00746995   IPI00445162   IPI00854844   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUT6
IntAct (EBI)Q6ZUT6
BioGRIDC15orf52
STRING (EMBL)C15orf52
ZODIACC15orf52
Ontologies - Pathways
QuickGOQ6ZUT6
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkC15orf52
Atlas of Cancer Signalling NetworkC15orf52
Wikipedia pathwaysC15orf52
Orthology - Evolution
OrthoDB388115
Phylogenetic Trees/Animal Genes : TreeFamC15orf52
HOVERGENQ6ZUT6
HOGENOMQ6ZUT6
Homologs : HomoloGeneC15orf52
Homology/Alignments : Family Browser (UCSC)C15orf52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf52
dbVarC15orf52
ClinVarC15orf52
1000_GenomesC15orf52 
Exome Variant ServerC15orf52
ExAC (Exome Aggregation Consortium)C15orf52 (select the gene name)
Genetic variants : HAPMAP388115
Genomic Variants (DGV)C15orf52 [DGVbeta]
DECIPHERC15orf52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf52 
Mutations
ICGC Data PortalC15orf52 
TCGA Data PortalC15orf52 
Broad Tumor PortalC15orf52
OASIS PortalC15orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf52
DgiDB (Drug Gene Interaction Database)C15orf52
DoCM (Curated mutations)C15orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf52 (select a term)
intoGenC15orf52
Cancer3DC15orf52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf52
Genetic Testing Registry C15orf52
NextProtQ6ZUT6 [Medical]
TSGene388115
GENETestsC15orf52
Target ValidationC15orf52
Huge Navigator C15orf52 [HugePedia]
snp3D : Map Gene to Disease388115
BioCentury BCIQC15orf52
ClinGenC15orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388115
Chemical/Pharm GKB GenePA162378161
Clinical trialC15orf52
Miscellaneous
canSAR (ICR)C15orf52 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf52
EVEXC15orf52
GoPubMedC15orf52
iHOPC15orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:25 CEST 2017

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